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Cobalt in PDB 5ec3: Structural Insight Into the Catalyitc Mechanism of Human 4- Hydroxyphenylpyruvate Dioxygenase

Enzymatic activity of Structural Insight Into the Catalyitc Mechanism of Human 4- Hydroxyphenylpyruvate Dioxygenase

All present enzymatic activity of Structural Insight Into the Catalyitc Mechanism of Human 4- Hydroxyphenylpyruvate Dioxygenase:
1.13.11.27;

Protein crystallography data

The structure of Structural Insight Into the Catalyitc Mechanism of Human 4- Hydroxyphenylpyruvate Dioxygenase, PDB code: 5ec3 was solved by W.C.Yang, G.F.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.91 / 2.10
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 98.540, 98.540, 87.270, 90.00, 90.00, 120.00
R / Rfree (%) 15.4 / 19.2

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Structural Insight Into the Catalyitc Mechanism of Human 4- Hydroxyphenylpyruvate Dioxygenase (pdb code 5ec3). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Structural Insight Into the Catalyitc Mechanism of Human 4- Hydroxyphenylpyruvate Dioxygenase, PDB code: 5ec3:

Cobalt binding site 1 out of 1 in 5ec3

Go back to Cobalt Binding Sites List in 5ec3
Cobalt binding site 1 out of 1 in the Structural Insight Into the Catalyitc Mechanism of Human 4- Hydroxyphenylpyruvate Dioxygenase


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structural Insight Into the Catalyitc Mechanism of Human 4- Hydroxyphenylpyruvate Dioxygenase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co401

b:17.5
occ:1.00
 OE1 A:GLU349 2.0 16.7 1.0
NE2 A:HIS266 2.1 14.0 1.0
NE2 A:HIS183 2.1 13.8 1.0
O A:HOH706 2.1 27.9 1.0
O A:HOH623 2.7 33.4 1.0
CE1 A:HIS266 3.0 12.5 1.0
CD A:GLU349 3.0 18.4 1.0
CE1 A:HIS183 3.0 14.6 1.0
CD2 A:HIS266 3.1 14.7 1.0
CD2 A:HIS183 3.1 11.1 1.0
OE2 A:GLU349 3.4 19.7 1.0
ND1 A:HIS266 4.2 14.8 1.0
CE1 A:PHE336 4.2 15.7 1.0
ND1 A:HIS183 4.2 12.0 1.0
NE2 A:GLN334 4.2 12.3 1.0
CG2 A:VAL185 4.2 13.5 1.0
CG A:HIS266 4.2 13.8 1.0
CG A:HIS183 4.3 15.0 1.0
CB A:ALA268 4.3 9.8 1.0
CG A:GLU349 4.3 11.9 1.0
CB A:GLU349 4.5 10.2 1.0
CZ A:PHE336 4.6 13.7 1.0

Reference:

W.C.Yang, G.F.Yang. Structural Insight Into the Catalyitc Mechanism of Human 4-Hydroxyphenylpyruvate Dioxygenase To Be Published.
Page generated: Sun Jul 13 20:20:47 2025

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