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Cobalt in PDB 5f8b: Crystallographic Structure of Psoe with Co

Protein crystallography data

The structure of Crystallographic Structure of Psoe with Co, PDB code: 5f8b was solved by K.Hara, H.Hashimoto, T.Yamamoto, Y.Tsunematsu, K.Watanabe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.63 / 2.54
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 123.331, 123.331, 75.638, 90.00, 90.00, 120.00
R / Rfree (%) 19.1 / 24.7

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystallographic Structure of Psoe with Co (pdb code 5f8b). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystallographic Structure of Psoe with Co, PDB code: 5f8b:

Cobalt binding site 1 out of 1 in 5f8b

Go back to Cobalt Binding Sites List in 5f8b
Cobalt binding site 1 out of 1 in the Crystallographic Structure of Psoe with Co


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystallographic Structure of Psoe with Co within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co301

b:55.9
occ:0.50
O A:HOH412 2.3 54.5 0.5
OD1 A:ASP136 4.3 50.1 1.0
O A:GLN179 4.4 62.1 1.0
OD1 A:ASN180 4.8 55.4 1.0
HG2 A:GLU139 4.8 54.3 1.0
CG A:ASP136 4.9 45.5 1.0

Reference:

T.Yamamoto, Y.Tsunematsu, K.Hara, T.Suzuki, S.Kishimoto, H.Kawagishi, H.Noguchi, H.Hashimoto, Y.Tang, K.Hotta, K.Watanabe. Oxidative Trans to Cis Isomerization of Olefins in Polyketide Biosynthesis. Angew. Chem. Int. Ed. Engl. V. 55 6207 2016.
ISSN: ESSN 1521-3773
PubMed: 27072782
DOI: 10.1002/ANIE.201600940
Page generated: Tue Jul 30 17:52:20 2024

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