Cobalt in PDB 5gun: Crystal Structure of D(Gtggaatggaac)

The structure of Crystal Structure of D(Gtggaatggaac), PDB code: 5gun was solved by R.B.Satange, Y.F.Kao, M.H.Hou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.42 / 2.59
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	61.993, 61.993, 208.727, 90.00, 90.00, 120.00
R / Rfree (%)	24.3 / 28.8

The binding sites of Cobalt atom in the Crystal Structure of D(Gtggaatggaac) (pdb code 5gun). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 8 binding sites of Cobalt where determined in the Crystal Structure of D(Gtggaatggaac), PDB code: 5gun:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Cobalt binding site 1 out of 8 in the Crystal Structure of D(Gtggaatggaac)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of D(Gtggaatggaac) within 5.0Å range: probe atom residue distance (Å) B Occ A:Co101 b:44.5 occ:1.00 O B:HOH202 2.2 19.3 1.0 O6 A:DG9 2.6 73.4 1.0 O6 B:DG16 2.9 70.9 1.0 C6 A:DG9 3.7 62.4 1.0 C6 B:DG16 3.9 69.2 1.0 N7 B:DG16 4.1 62.8 1.0 OP2 E:DG56 4.3 0.9 1.0 C5 B:DG16 4.4 62.7 1.0 N1 A:DG9 4.4 57.5 1.0 OP1 E:DG56 4.5 0.3 1.0 N7 B:DG15 4.7 70.4 1.0 C5 A:DG9 4.8 63.6 1.0 P E:DG56 5.0 0.1 1.0

Cobalt binding site 2 out of 8 in the Crystal Structure of D(Gtggaatggaac)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of D(Gtggaatggaac) within 5.0Å range: probe atom residue distance (Å) B Occ A:Co102 b:31.5 occ:1.00 O6 A:DG4 2.6 46.2 1.0 O6 B:DG21 2.6 54.7 1.0 C6 B:DG21 3.7 47.3 1.0 C6 A:DG4 3.7 45.0 1.0 O B:HOH204 3.8 44.6 1.0 N1 B:DG21 4.5 40.0 1.0 C5 A:DG4 4.6 54.7 1.0 C5 B:DG21 4.6 44.9 1.0 N7 A:DG4 4.7 49.4 1.0 N1 A:DG4 4.7 43.5 1.0 OP1 D:DG44 4.7 53.5 1.0 N7 B:DG21 4.9 38.5 1.0 N7 A:DG3 4.9 47.8 1.0 O6 A:DG3 4.9 50.2 1.0 C5 A:DG3 4.9 45.9 1.0 C6 A:DG3 4.9 44.9 1.0 O6 B:DG20 5.0 63.4 1.0

Cobalt binding site 3 out of 8 in the Crystal Structure of D(Gtggaatggaac)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Crystal Structure of D(Gtggaatggaac) within 5.0Å range: probe atom residue distance (Å) B Occ B:Co101 b:41.0 occ:1.00 O D:HOH204 2.6 41.7 1.0 OP2 B:DA23 2.6 48.3 1.0 O D:HOH203 3.9 27.2 1.0 P B:DA23 4.0 54.6 1.0 O4' F:DG61 4.3 50.9 1.0 OP1 B:DA23 4.5 63.2 1.0 C3' B:DA22 4.8 30.7 1.0 O3' B:DA22 4.8 33.4 1.0 OP1 B:DA22 4.8 34.4 1.0 C4' F:DG61 4.8 50.4 1.0 OP2 D:DA47 4.9 55.1 1.0

Cobalt binding site 4 out of 8 in the Crystal Structure of D(Gtggaatggaac)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Crystal Structure of D(Gtggaatggaac) within 5.0Å range: probe atom residue distance (Å) B Occ C:Co101 b:61.0 occ:1.00 O D:HOH202 2.3 26.1 1.0 O6 C:DG33 2.4 79.0 1.0 O6 D:DG40 2.4 72.6 1.0 C6 D:DG40 3.4 68.3 1.0 C6 C:DG33 3.5 62.0 1.0 O D:HOH201 3.7 56.6 1.0 N7 D:DG40 3.9 60.3 1.0 C5 D:DG40 4.0 61.7 1.0 C5 C:DG33 4.3 56.3 1.0 N7 C:DG33 4.5 60.7 1.0 N1 C:DG33 4.5 55.6 1.0 N1 D:DG40 4.6 63.3 1.0

Cobalt binding site 5 out of 8 in the Crystal Structure of D(Gtggaatggaac)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 5 of Crystal Structure of D(Gtggaatggaac) within 5.0Å range: probe atom residue distance (Å) B Occ D:Co101 b:42.5 occ:1.00 O6 D:DG45 2.7 47.6 1.0 O6 C:DG28 3.5 51.9 1.0 C6 D:DG45 3.9 40.1 1.0 O C:HOH201 3.9 24.4 1.0 OP1 B:DG20 4.0 76.8 1.0 O D:HOH205 4.4 53.4 1.0 N1 D:DG45 4.6 38.2 1.0 C6 C:DG28 4.7 53.3 1.0 P B:DG20 4.9 65.0 1.0 C5 D:DG45 5.0 45.9 1.0

Cobalt binding site 6 out of 8 in the Crystal Structure of D(Gtggaatggaac)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 6 of Crystal Structure of D(Gtggaatggaac) within 5.0Å range: probe atom residue distance (Å) B Occ E:Co101 b:12.6 occ:1.00 O6 E:DG49 2.3 54.9 1.0 N7 E:DG49 2.9 54.2 1.0 C6 E:DG49 3.1 54.3 1.0 C5 E:DG49 3.3 53.9 1.0 C8 E:DG49 4.2 53.8 1.0 N1 E:DG49 4.4 53.9 1.0 O4 E:DT50 4.5 55.0 1.0 C4 E:DG49 4.7 53.4 1.0

Cobalt binding site 7 out of 8 in the Crystal Structure of D(Gtggaatggaac)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 7 of Crystal Structure of D(Gtggaatggaac) within 5.0Å range: probe atom residue distance (Å) B Occ F:Co101 b:67.5 occ:1.00 O6 F:DG64 2.3 66.9 1.0 O6 E:DG57 2.9 66.8 1.0 C6 F:DG64 3.4 63.0 1.0 N7 E:DG57 3.6 68.4 1.0 C6 E:DG57 3.7 66.8 1.0 C5 E:DG57 4.0 67.5 1.0 C5 F:DG64 4.1 57.9 1.0 N7 F:DG64 4.2 58.4 1.0 N1 F:DG64 4.4 71.6 1.0 C8 E:DG57 4.8 73.2 1.0 N1 E:DG57 4.9 66.1 1.0

Cobalt binding site 8 out of 8 in the Crystal Structure of D(Gtggaatggaac)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 8 of Crystal Structure of D(Gtggaatggaac) within 5.0Å range: probe atom residue distance (Å) B Occ F:Co102 b:14.5 occ:1.00 O6 F:DG61 2.2 56.2 1.0 O6 C:DG25 2.9 38.9 1.0 N7 F:DG61 3.0 54.2 1.0 C6 F:DG61 3.0 55.1 1.0 C5 F:DG61 3.3 54.1 1.0 C6 C:DG25 3.8 39.2 1.0 N7 C:DG25 4.0 40.3 1.0 C5 C:DG25 4.2 39.8 1.0 C8 F:DG61 4.3 53.1 1.0 N1 F:DG61 4.4 54.7 1.0 C2 A:DA5 4.4 45.2 1.0 O4 F:DT62 4.5 55.4 1.0 N4 D:DC48 4.5 39.3 1.0 N3 A:DA5 4.7 50.4 1.0 C4 F:DG61 4.7 55.6 1.0 C4' A:DA6 4.9 43.2 1.0 N1 C:DG25 5.0 39.0 1.0

T.Y.Huang, C.K.Chang, Y.F.Kao, C.H.Chin, C.W.Ni, H.Y.Hsu, N.J.Hu, L.C.Hsieh, S.H.Chou, I.R.Lee, M.H.Hou. Parity-Dependent Hairpin Configurations of Repetitive Dna Sequence Promote Slippage Associated with Dna Expansion Proc. Natl. Acad. Sci. V. 114 9535 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28827328
DOI: 10.1073/PNAS.1708691114