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Cobalt in PDB 5ktj: Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme
Protein crystallography data
The structure of Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme, PDB code: 5ktj
was solved by
L.A.Nguyen,
J.Wang,
T.A.Steitz,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 81.27 / 2.97 |
| Space group | I 41 2 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 85.190, 85.190, 256.540, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 19.6 / 25.7 |
Other elements in 5ktj:
The structure of Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme also contains other interesting chemical elements:
| Samarium | (Sm) | 10 atoms |
| Magnesium | (Mg) | 19 atoms |
Cobalt Binding Sites:
The binding sites of Cobalt atom in the Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme
(pdb code 5ktj). This binding sites where shown within
5.0 Angstroms radius around Cobalt atom.
In total 10 binding sites of Cobalt where determined in the Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme, PDB code: 5ktj:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;
In total 10 binding sites of Cobalt where determined in the Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme, PDB code: 5ktj:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;
Cobalt binding site 1 out of 10 in 5ktj
Go back to
Cobalt Binding Sites List in 5ktj
Cobalt binding site 1 out
of 10 in the Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 1 of Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme within 5.0Å range:
|
Cobalt binding site 2 out of 10 in 5ktj
Go back to
Cobalt Binding Sites List in 5ktj
Cobalt binding site 2 out
of 10 in the Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 2 of Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme within 5.0Å range:
|
Cobalt binding site 3 out of 10 in 5ktj
Go back to
Cobalt Binding Sites List in 5ktj
Cobalt binding site 3 out
of 10 in the Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 3 of Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme within 5.0Å range:
|
Cobalt binding site 4 out of 10 in 5ktj
Go back to
Cobalt Binding Sites List in 5ktj
Cobalt binding site 4 out
of 10 in the Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 4 of Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme within 5.0Å range:
|
Cobalt binding site 5 out of 10 in 5ktj
Go back to
Cobalt Binding Sites List in 5ktj
Cobalt binding site 5 out
of 10 in the Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 5 of Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme within 5.0Å range:
|
Cobalt binding site 6 out of 10 in 5ktj
Go back to
Cobalt Binding Sites List in 5ktj
Cobalt binding site 6 out
of 10 in the Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 6 of Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme within 5.0Å range:
|
Cobalt binding site 7 out of 10 in 5ktj
Go back to
Cobalt Binding Sites List in 5ktj
Cobalt binding site 7 out
of 10 in the Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 7 of Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme within 5.0Å range:
|
Cobalt binding site 8 out of 10 in 5ktj
Go back to
Cobalt Binding Sites List in 5ktj
Cobalt binding site 8 out
of 10 in the Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 8 of Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme within 5.0Å range:
|
Cobalt binding site 9 out of 10 in 5ktj
Go back to
Cobalt Binding Sites List in 5ktj
Cobalt binding site 9 out
of 10 in the Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 9 of Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme within 5.0Å range:
|
Cobalt binding site 10 out of 10 in 5ktj
Go back to
Cobalt Binding Sites List in 5ktj
Cobalt binding site 10 out
of 10 in the Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cobalt with other atoms in the Co binding
site number 10 of Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme within 5.0Å range:
|
Reference:
L.A.Nguyen,
J.Wang,
T.A.Steitz.
Crystal Structure of Pistol, A Class of Self-Cleaving Ribozyme. Proc. Natl. Acad. Sci. V. 114 1021 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28096403
DOI: 10.1073/PNAS.1611191114
Page generated: Tue Jul 30 18:02:26 2024
ISSN: ESSN 1091-6490
PubMed: 28096403
DOI: 10.1073/PNAS.1611191114
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