Cobalt in PDB 5kzk: Crystal Structure of Rrna Methyltransferase From Sinorhizobium Meliloti

The structure of Crystal Structure of Rrna Methyltransferase From Sinorhizobium Meliloti, PDB code: 5kzk was solved by D.Dey, R.P.Hegde, S.C.Almo, S.Ramakumar, U.A.Ramagopal, New Yorkstructural Genomics Research Consortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	67.36 / 2.28
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	65.820, 84.302, 112.045, 90.00, 90.00, 90.00
R / Rfree (%)	20.6 / 25.9

The binding sites of Cobalt atom in the Crystal Structure of Rrna Methyltransferase From Sinorhizobium Meliloti (pdb code 5kzk). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of Rrna Methyltransferase From Sinorhizobium Meliloti, PDB code: 5kzk:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Crystal Structure of Rrna Methyltransferase From Sinorhizobium Meliloti


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Rrna Methyltransferase From Sinorhizobium Meliloti within 5.0Å range: probe atom residue distance (Å) B Occ A:Co301 b:44.3 occ:1.00 OE2 A:GLU43 2.3 55.9 1.0 ND1 A:HIS40 2.3 41.2 1.0 OE1 A:GLU43 2.8 53.0 1.0 CD A:GLU43 2.8 54.5 1.0 CE1 A:HIS40 3.1 41.9 1.0 CG A:HIS40 3.4 38.5 1.0 CB A:HIS40 3.8 36.9 1.0 CA A:HIS40 4.0 37.0 1.0 CG A:GLU43 4.2 54.7 1.0 NE2 A:HIS40 4.2 41.8 1.0 CD2 A:HIS40 4.4 39.2 1.0 N A:HIS40 4.7 39.3 1.0

Cobalt binding site 2 out of 2 in the Crystal Structure of Rrna Methyltransferase From Sinorhizobium Meliloti


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Rrna Methyltransferase From Sinorhizobium Meliloti within 5.0Å range: probe atom residue distance (Å) B Occ B:Co301 b:45.1 occ:1.00 O B:HOH422 2.4 33.7 1.0 ND1 B:HIS40 2.5 46.6 1.0 OE2 B:GLU43 2.9 48.4 1.0 CE1 B:HIS40 3.3 47.8 1.0 CG B:HIS40 3.5 47.0 1.0 CD B:GLU43 3.8 48.4 1.0 CB B:HIS40 3.9 43.5 1.0 CA B:HIS40 4.3 41.3 1.0 CG B:GLU43 4.3 44.1 1.0 NE2 B:HIS40 4.5 49.7 1.0 CD2 B:HIS40 4.6 47.5 1.0 OE1 B:GLU43 4.7 47.2 1.0

D.Dey, R.P.Hegde, S.C.Almo, S.Ramakumar, U.A.Ramagopal. Crystal Structure of Rrna Methyltransferase From Sinorhizobium Meliloti To Be Published.