Cobalt in PDB 5l0z: Crystal Structure of Adomet Bound Rrna Methyltransferase From Sinorhizobium Meliloti

The structure of Crystal Structure of Adomet Bound Rrna Methyltransferase From Sinorhizobium Meliloti, PDB code: 5l0z was solved by D.Dey, R.P.Hegde, S.C.Almo, S.Ramakumar, U.A.Ramagopal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	65.94 / 2.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	64.855, 82.896, 108.806, 90.00, 90.00, 90.00
R / Rfree (%)	19.1 / 26.5

The binding sites of Cobalt atom in the Crystal Structure of Adomet Bound Rrna Methyltransferase From Sinorhizobium Meliloti (pdb code 5l0z). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 4 binding sites of Cobalt where determined in the Crystal Structure of Adomet Bound Rrna Methyltransferase From Sinorhizobium Meliloti, PDB code: 5l0z:
Jump to Cobalt binding site number: 1; 2; 3; 4;

Cobalt binding site 1 out of 4 in the Crystal Structure of Adomet Bound Rrna Methyltransferase From Sinorhizobium Meliloti


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Adomet Bound Rrna Methyltransferase From Sinorhizobium Meliloti within 5.0Å range: probe atom residue distance (Å) B Occ A:Co301 b:71.2 occ:1.00 ND1 A:HIS40 2.4 68.5 1.0 OE2 A:GLU43 2.5 55.7 1.0 CE1 A:HIS40 2.6 68.8 1.0 CD A:GLU43 2.9 54.8 1.0 OE1 A:GLU43 3.2 51.1 1.0 CG A:HIS40 3.5 66.4 1.0 NE2 A:HIS40 3.7 67.8 1.0 CG A:GLU43 3.9 55.3 1.0 OD1 A:ASP31 4.0 98.4 1.0 CD2 A:HIS40 4.1 67.1 1.0 CB A:HIS40 4.3 62.9 1.0 CA A:HIS40 4.7 61.4 1.0 CG A:ASP31 5.0 93.7 1.0

Cobalt binding site 2 out of 4 in the Crystal Structure of Adomet Bound Rrna Methyltransferase From Sinorhizobium Meliloti


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Adomet Bound Rrna Methyltransferase From Sinorhizobium Meliloti within 5.0Å range: probe atom residue distance (Å) B Occ A:Co302 b:71.5 occ:1.00 OXT A:SAM304 2.1 71.7 1.0 C A:SAM304 2.4 75.4 1.0 O A:SAM304 2.9 74.9 1.0 N A:SAM304 3.0 75.8 1.0 CA A:SAM304 3.3 74.2 1.0 O A:ALA239 4.6 53.4 1.0 CB A:SAM304 4.7 73.2 1.0 O A:GLN238 4.7 50.4 1.0

Cobalt binding site 3 out of 4 in the Crystal Structure of Adomet Bound Rrna Methyltransferase From Sinorhizobium Meliloti


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Crystal Structure of Adomet Bound Rrna Methyltransferase From Sinorhizobium Meliloti within 5.0Å range: probe atom residue distance (Å) B Occ B:Co301 b:90.5 occ:1.00 ND1 B:HIS40 2.7 77.5 1.0 CE1 B:HIS40 3.0 78.7 1.0 OE2 B:GLU43 3.0 68.7 1.0 CG B:HIS40 4.0 74.6 1.0 CD B:GLU43 4.1 67.0 1.0 NE2 B:HIS40 4.3 78.3 1.0 CE B:LYS39 4.5 79.8 1.0 CB B:HIS40 4.8 70.5 1.0 CD2 B:HIS40 4.8 75.2 1.0 OD1 B:ASP31 4.8 94.2 1.0 CG B:GLU43 4.9 64.6 1.0 NZ B:LYS39 5.0 81.6 1.0

Cobalt binding site 4 out of 4 in the Crystal Structure of Adomet Bound Rrna Methyltransferase From Sinorhizobium Meliloti


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Crystal Structure of Adomet Bound Rrna Methyltransferase From Sinorhizobium Meliloti within 5.0Å range: probe atom residue distance (Å) B Occ B:Co302 b:54.6 occ:0.50 O B:SAM304 1.9 80.1 1.0 C B:SAM304 3.0 81.3 1.0 N B:SAM304 3.0 78.2 1.0 CA B:SAM304 3.5 81.5 1.0 OXT B:SAM304 4.1 79.7 1.0 O B:GLN238 4.5 59.2 1.0 CB B:SAM304 4.9 82.7 1.0

D.Dey, R.P.Hegde, S.C.Almo, S.Ramakumar, U.A.Ramagopal. Crystal Structure of Adomet Bound Rrna Methyltransferase From Sinorhizobium Meliloti To Be Published.