Cobalt in PDB 5ljy: Structure of Hantavirus Envelope Glycoprotein Gc in Complex with Scfv A5

The structure of Structure of Hantavirus Envelope Glycoprotein Gc in Complex with Scfv A5, PDB code: 5ljy was solved by P.Guardado-Calvo, E.Stettner, S.A.Jeffers, F.A.Rey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.27 / 3.00
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	116.623, 148.795, 37.998, 90.00, 90.00, 90.00
R / Rfree (%)	21.3 / 27

The binding sites of Cobalt atom in the Structure of Hantavirus Envelope Glycoprotein Gc in Complex with Scfv A5 (pdb code 5ljy). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Structure of Hantavirus Envelope Glycoprotein Gc in Complex with Scfv A5, PDB code: 5ljy:

Cobalt binding site 1 out of 1 in the Structure of Hantavirus Envelope Glycoprotein Gc in Complex with Scfv A5


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of Hantavirus Envelope Glycoprotein Gc in Complex with Scfv A5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Co502 b:0.8 occ:1.00 CO A:NCO502 0.0 0.8 1.0 N1 A:NCO502 2.0 93.1 1.0 N6 A:NCO502 2.0 60.6 1.0 N5 A:NCO502 2.0 0.7 1.0 N4 A:NCO502 2.0 0.9 1.0 N2 A:NCO502 2.0 0.2 1.0 N3 A:NCO502 2.0 0.0 1.0 O A:ASN316 3.6 0.8 1.0 O A:GLY318 4.5 73.6 1.0 OE2 A:GLU163 4.6 0.4 1.0 C A:ASN316 4.6 0.4 1.0 OE2 A:GLU319 4.8 98.9 1.0 OE1 A:GLU319 4.9 0.2 1.0 CA A:ASN316 5.0 0.3 1.0

P.Guardado-Calvo, E.A.Bignon, E.Stettner, S.A.Jeffers, J.Perez-Vargas, G.Pehau-Arnaudet, M.A.Tortorici, J.L.Jestin, P.England, N.D.Tischler, F.A.Rey. Mechanistic Insight Into Bunyavirus-Induced Membrane Fusion From Structure-Function Analyses of the Hantavirus Envelope Glycoprotein Gc. Plos Pathog. V. 12 05813 2016.
ISSN: ESSN 1553-7374
PubMed: 27783711
DOI: 10.1371/JOURNAL.PPAT.1005813