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Cobalt in PDB 5nfl: Crystal Structure of Yrba From Sinorhizobium Meliloti in Complex with Cobalt.

Protein crystallography data

The structure of Crystal Structure of Yrba From Sinorhizobium Meliloti in Complex with Cobalt., PDB code: 5nfl was solved by T.Roret, C.Didierjean, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.37 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 30.802, 31.944, 62.741, 90.00, 90.00, 90.00
R / Rfree (%) 13.3 / 15

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Yrba From Sinorhizobium Meliloti in Complex with Cobalt. (pdb code 5nfl). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Yrba From Sinorhizobium Meliloti in Complex with Cobalt., PDB code: 5nfl:

Cobalt binding site 1 out of 1 in 5nfl

Go back to Cobalt Binding Sites List in 5nfl
Cobalt binding site 1 out of 1 in the Crystal Structure of Yrba From Sinorhizobium Meliloti in Complex with Cobalt.


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Yrba From Sinorhizobium Meliloti in Complex with Cobalt. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co101

b:10.2
occ:1.00
NE2 A:HIS32 2.1 7.9 1.0
NE2 A:HIS67 2.2 8.6 1.0
O A:HOH209 2.3 11.7 1.0
O A:HOH204 2.4 18.0 1.0
O A:HOH282 2.5 17.3 1.0
CE1 A:HIS32 3.1 8.6 1.0
CD2 A:HIS67 3.1 9.1 1.0
CD2 A:HIS32 3.2 8.7 1.0
CE1 A:HIS67 3.2 9.0 1.0
HE1 A:HIS32 3.2 10.3 1.0
HD2 A:HIS67 3.2 10.9 1.0
O A:HOH291 3.3 33.9 1.0
HE1 A:HIS67 3.4 10.8 1.0
HD2 A:HIS32 3.4 10.4 1.0
HB2 A:ALA68 3.9 10.9 1.0
OD2 A:ASP31 4.0 13.4 1.0
OD1 A:ASP31 4.0 12.3 1.0
ND1 A:HIS32 4.2 9.3 1.0
ND1 A:HIS67 4.3 9.2 1.0
CG A:HIS67 4.3 9.0 1.0
CG A:HIS32 4.3 8.5 1.0
CG A:ASP31 4.4 12.9 1.0
CB A:ALA68 4.8 9.1 1.0
HA A:ALA68 4.9 10.6 1.0
HA3 A:GLY64 4.9 14.7 1.0
HD1 A:HIS32 5.0 11.1 1.0

Reference:

T.Roret, C.Didierjean. Crystal Structure of Yrba From Sinorhizobium Meliloti in Complex with Cobalt. To Be Published.
Page generated: Sun Dec 13 10:48:11 2020

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