Chemical elements
  Cobalt
    Isotopes
    Energy
    Production
    Preparation
    Application
    Physical Properties
    Chemical Properties
    Compounds
    PDB 1a0c-1epy
    PDB 1et4-1k7y
    PDB 1k98-1r6x
    PDB 1r8k-1v9b
    PDB 1vl3-212d
    PDB 222d-2eff
    PDB 2ehd-2j3z
    PDB 2j4j-2r1p
    PDB 2r2s-331d
    PDB 362d-3fqw
    PDB 3ft6-3igy
    PDB 3igz-3o0n
    PDB 3o0o-4req
    PDB 4xim-9icb
      4xim
      5cel
      5req
      6cel
      6req
      7cel
      7req
      9icb

Cobalt in the structure of Methylmalonyl-Coa Mutase, Y89F Mutant, Substrate Complex (pdb 5req)






The binding sites of Cobalt atom in the structure of Methylmalonyl-Coa Mutase, Y89F Mutant, Substrate Complex (pdb code 5req). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom.
The 5req structure was solved by P.R.EVANS, N.H.THOMAE, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)20.0-2.2
Space groupP1211
a (A)120.200
b (A)161.890
c (A)88.700
alpha (°)90.00
beta (°)104.88
gamma (°)90.00
Rfactor (%)24.6
Rfree (%)29.2


Cobalt Binding Sites:

Cobalt binding site 1 out of 2 in 5req


Cobalt binding site 1 out of 2 in 5req
Click to enlarge
stereopicture of Cobalt binding site 1 out of 2 in 5req
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 5req. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His610, A: B121800,

conact list:


AtomAtomDistance (A)
CoNE2 A:His6102.43
CoND1 A:His6104.54
CoCD2 A:His6103.21
CoCE1 A:His6103.51
CoCG A:His6104.45
CoC18 A:B1218004.11
CoC11 A:B1218002.80
CoC1 A:B1218002.78
CoC8 A:B1218004.31
CoC2 A:B1218004.03
CoC46 A:B1218004.70
CoN22 A:B1218001.99
CoC35 A:B1218004.78
CoC17 A:B1218004.22
CoN21 A:B1218001.69
CoC12 A:B1218004.12
CoC19 A:B1218002.86
CoCO A:B1218000.00
CoC15 A:B1218003.44
CoC16 A:B1218002.95
CoC6 A:B1218003.02
CoC5 A:B1218003.26
CoC4 A:B1218002.72
CoC10 A:B1218003.26
CoC13 A:B1218004.16
CoC20 A:B1218003.54
CoC48 A:B1218004.75
CoC42 A:B1218004.63
CoC9 A:B1218002.95
CoC54 A:B1218004.68
CoC14 A:B1218002.90
CoN24 A:B1218001.90
CoN23 A:B1218001.80
CoC7 A:B1218004.34
CoC53 A:B1218004.94
CoC3 A:B1218004.02
CoC26 A:B1218004.44

interactive model:


Cobalt binding site 2 out of 2 in 5req


Cobalt binding site 2 out of 2 in 5req
Click to enlarge
stereopicture of Cobalt binding site 2 out of 2 in 5req
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cobalt in the PDB 5req. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: His610, C: B122800,

conact list:


AtomAtomDistance (A)
CoNE2 C:His6102.36
CoND1 C:His6104.44
CoCD2 C:His6103.25
CoCE1 C:His6103.37
CoCG C:His6104.43
CoC18 C:B1228004.08
CoC11 C:B1228002.88
CoC1 C:B1228002.76
CoC8 C:B1228004.33
CoC2 C:B1228004.01
CoC46 C:B1228004.78
CoN22 C:B1228002.02
CoC35 C:B1228004.78
CoC17 C:B1228004.20
CoN21 C:B1228001.67
CoC12 C:B1228004.19
CoC19 C:B1228002.83
CoCO C:B1228000.00
CoC15 C:B1228003.42
CoC30 C:B1228004.98
CoC16 C:B1228002.91
CoC6 C:B1228003.02
CoC5 C:B1228003.26
CoC4 C:B1228002.71
CoC10 C:B1228003.28
CoC13 C:B1228004.19
CoC20 C:B1228003.47
CoC48 C:B1228004.77
CoC42 C:B1228004.64
CoC9 C:B1228002.98
CoC54 C:B1228004.73
CoC14 C:B1228002.92
CoN24 C:B1228001.89
CoN23 C:B1228001.86
CoC7 C:B1228004.36
CoC53 C:B1228004.92
CoC3 C:B1228004.00
CoC26 C:B1228004.44

interactive model:




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