Cobalt in PDB 5xjw: Crystal Structure of the [CO2+-(Chromomycin A3)2]-Ccg Repeats Complex

The structure of Crystal Structure of the [CO2+-(Chromomycin A3)2]-Ccg Repeats Complex, PDB code: 5xjw was solved by W.H.Tseng, P.C.Wu, R.B.Satange, M.H.Hou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.58 / 2.10
Space group	P 32 1 2
Cell size a, b, c (Å), α, β, γ (°)	48.309, 48.309, 83.636, 90.00, 90.00, 120.00
R / Rfree (%)	22.5 / 24.6

The binding sites of Cobalt atom in the Crystal Structure of the [CO2+-(Chromomycin A3)2]-Ccg Repeats Complex (pdb code 5xjw). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 3 binding sites of Cobalt where determined in the Crystal Structure of the [CO2+-(Chromomycin A3)2]-Ccg Repeats Complex, PDB code: 5xjw:
Jump to Cobalt binding site number: 1; 2; 3;

Cobalt binding site 1 out of 3 in the Crystal Structure of the [CO2+-(Chromomycin A3)2]-Ccg Repeats Complex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of the [CO2+-(Chromomycin A3)2]-Ccg Repeats Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Co107 b:39.7 occ:1.00 O9 A:CPH106 1.9 38.9 1.0 O1 B:CPH103 1.9 32.8 1.0 O1 A:CPH106 1.9 32.1 1.0 O9 B:CPH103 1.9 41.0 1.0 O A:HOH206 2.2 31.8 1.0 O B:HOH203 2.2 33.8 1.0 C1 B:CPH103 2.9 36.7 1.0 C1 A:CPH106 2.9 37.0 1.0 C9 A:CPH106 3.0 37.2 1.0 C9 B:CPH103 3.0 37.2 1.0 C9A A:CPH106 3.4 37.6 1.0 C9A B:CPH103 3.4 37.5 1.0 O8 A:CPH106 4.0 38.2 1.0 O8 B:CPH103 4.0 38.2 1.0 O2 A:DC9 4.1 43.5 1.0 O2 B:DC22 4.2 41.7 1.0 C2 B:CPH103 4.2 44.3 1.0 C8A A:CPH106 4.2 39.2 1.0 C8A B:CPH103 4.3 39.1 1.0 C2 A:CPH106 4.3 43.5 1.0 O4' B:DC23 4.4 40.7 1.0 O4' A:DC10 4.4 39.6 1.0 C1 A:DDA101 4.6 42.9 1.0 O1 A:DDA101 4.6 45.6 1.0 C1 B:DDA104 4.6 43.6 1.0 C8 A:CPH106 4.6 35.6 1.0 C8 B:CPH103 4.7 34.9 1.0 O1 B:DDA104 4.7 45.7 1.0 C2' B:DC22 4.7 36.0 1.0 C2' A:DC9 4.7 35.3 1.0 C1' A:DC9 4.7 37.6 1.0 C1' B:DC22 4.8 38.6 1.0 C4A A:CPH106 4.8 35.5 1.0 C4A B:CPH103 4.8 37.0 1.0 C2 A:DDA101 4.8 41.2 1.0 C2 B:DDA104 4.9 40.8 1.0 N2 B:DG21 4.9 37.6 1.0 N2 A:DG8 5.0 39.9 1.0 C4' A:DC10 5.0 42.3 1.0 C4' B:DC23 5.0 43.7 1.0

Cobalt binding site 2 out of 3 in the Crystal Structure of the [CO2+-(Chromomycin A3)2]-Ccg Repeats Complex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of the [CO2+-(Chromomycin A3)2]-Ccg Repeats Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Co108 b:56.9 occ:1.00 O A:HOH213 1.9 46.3 1.0 O A:HOH204 2.0 43.9 1.0 O A:HOH202 2.0 52.7 1.0 N7 A:DG8 2.2 48.5 1.0 O A:HOH207 2.2 54.7 1.0 O A:HOH218 2.4 56.8 1.0 C8 A:DG8 3.1 48.1 1.0 C5 A:DG8 3.3 51.2 1.0 O6 A:DG8 3.6 45.3 1.0 C6 A:DG8 3.8 49.5 1.0 N7 A:DG5 4.0 59.1 1.0 OP1 A:DG8 4.0 54.5 1.0 O6 A:DG5 4.3 52.0 1.0 N9 A:DG8 4.4 49.5 1.0 C4 A:DG8 4.5 46.5 1.0 OP2 A:DG8 4.6 57.8 1.0 C5 A:DG5 4.7 54.8 1.0 P A:DG8 4.8 60.2 1.0 C6 A:DG5 4.9 52.3 1.0 C8 A:DG5 4.9 57.4 1.0

Cobalt binding site 3 out of 3 in the Crystal Structure of the [CO2+-(Chromomycin A3)2]-Ccg Repeats Complex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Crystal Structure of the [CO2+-(Chromomycin A3)2]-Ccg Repeats Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Co107 b:58.3 occ:1.00 O B:HOH213 1.9 47.9 1.0 O B:HOH204 2.0 47.2 1.0 O B:HOH208 2.0 52.2 1.0 O B:HOH202 2.2 51.9 1.0 N7 B:DG21 2.3 49.0 1.0 O B:HOH222 2.4 61.6 1.0 C8 B:DG21 3.2 46.6 1.0 C5 B:DG21 3.4 49.1 1.0 O6 B:DG21 3.6 44.1 1.0 C6 B:DG21 3.9 48.1 1.0 N7 B:DG18 4.0 55.1 1.0 O6 B:DG18 4.2 49.4 1.0 OP1 B:DG21 4.3 59.4 1.0 N9 B:DG21 4.4 47.0 1.0 OP2 B:DG21 4.4 55.2 1.0 C4 B:DG21 4.5 44.4 1.0 C5 B:DG18 4.7 52.4 1.0 C6 B:DG18 4.8 48.9 1.0 P B:DG21 4.8 60.0 1.0 C8 B:DG18 4.9 56.1 1.0

W.H.Tseng, P.C.Wu, R.B.Satange, M.H.Hou. Crystal Structure of the [CO2+-(Chromomycin A3)2]-Ccg Repeats Complex To Be Published.