Cobalt in PDB 5ysc: Crystal Structure of Periplasmic Vitamin B12 Binding Protein Btuf of Vibrio Cholerae

The structure of Crystal Structure of Periplasmic Vitamin B12 Binding Protein Btuf of Vibrio Cholerae, PDB code: 5ysc was solved by S.Agarwal, B.Ghosh, J.Dasgupta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.68 / 1.67
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	55.877, 55.877, 279.163, 90.00, 90.00, 120.00
R / Rfree (%)	19.7 / 22.7

The binding sites of Cobalt atom in the Crystal Structure of Periplasmic Vitamin B12 Binding Protein Btuf of Vibrio Cholerae (pdb code 5ysc). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Periplasmic Vitamin B12 Binding Protein Btuf of Vibrio Cholerae, PDB code: 5ysc:

Cobalt binding site 1 out of 1 in the Crystal Structure of Periplasmic Vitamin B12 Binding Protein Btuf of Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Periplasmic Vitamin B12 Binding Protein Btuf of Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ A:Co401 b:19.3 occ:1.00 CO A:CNC401 0.0 19.3 1.0 N24 A:CNC401 1.9 20.3 1.0 N21 A:CNC401 1.9 27.3 1.0 N23 A:CNC401 1.9 17.5 1.0 N22 A:CNC401 1.9 13.7 1.0 C1A A:CNC401 2.1 35.1 1.0 N3B A:CNC401 2.3 15.5 1.0 C19 A:CNC401 2.8 24.8 1.0 C9 A:CNC401 2.9 20.0 1.0 C11 A:CNC401 2.9 18.6 1.0 C4 A:CNC401 2.9 20.6 1.0 C1 A:CNC401 2.9 25.4 1.0 C16 A:CNC401 2.9 19.3 1.0 C14 A:CNC401 3.0 19.0 1.0 C6 A:CNC401 3.0 15.4 1.0 N1A A:CNC401 3.2 35.9 1.0 C10 A:CNC401 3.2 16.9 1.0 C2B A:CNC401 3.3 16.3 1.0 C5 A:CNC401 3.4 18.1 1.0 C9B A:CNC401 3.4 17.4 1.0 C15 A:CNC401 3.4 22.7 1.0 C20 A:CNC401 3.6 22.6 1.0 C4B A:CNC401 3.8 22.0 1.0 C2 A:CNC401 4.2 23.3 1.0 C18 A:CNC401 4.2 23.3 1.0 C3 A:CNC401 4.2 24.9 1.0 C12 A:CNC401 4.2 16.4 1.0 C8 A:CNC401 4.2 14.9 1.0 C17 A:CNC401 4.2 27.4 1.0 C13 A:CNC401 4.2 16.9 1.0 C7 A:CNC401 4.2 12.6 1.0 N1B A:CNC401 4.4 16.2 1.0 C8B A:CNC401 4.5 19.6 1.0 C26 A:CNC401 4.6 23.5 1.0 C37 A:CNC401 4.7 20.6 1.0 C46 A:CNC401 4.8 20.1 1.0 C48 A:CNC401 4.8 22.6 1.0 C35 A:CNC401 4.9 15.9 1.0 C53 A:CNC401 4.9 17.8 1.0 C54 A:CNC401 4.9 22.9 1.0

S.Agarwal, S.Dey, B.Ghosh, M.Biswas, J.Dasgupta. Mechanistic Basis of Vitamin B12 and Cobinamide Salvaging By the Vibrio Species. Biochim Biophys Acta V.1867 140 2019PROTEINS Proteom.
ISSN: ISSN 1878-1454
PubMed: 30463026
DOI: 10.1016/J.BBAPAP.2018.11.004