Cobalt in PDB 5ywk: Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione-Methyl

All present enzymatic activity of Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione-Methyl:
1.13.11.27;

The structure of Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione-Methyl, PDB code: 5ywk was solved by W.C.Yang, H.Y.Lin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.52 / 2.80
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	95.753, 95.753, 194.584, 90.00, 90.00, 90.00
R / Rfree (%)	24.7 / 29.5

The binding sites of Cobalt atom in the Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione-Methyl (pdb code 5ywk). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione-Methyl, PDB code: 5ywk:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione-Methyl


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione-Methyl within 5.0Å range: probe atom residue distance (Å) B Occ A:Co501 b:25.6 occ:1.00 OE1 A:GLU394 1.9 29.1 1.0 O9 A:92X502 2.2 29.3 1.0 O A:HOH601 2.2 23.4 1.0 NE2 A:HIS308 2.3 19.5 1.0 O11 A:92X502 2.4 34.4 1.0 NE2 A:HIS226 2.4 23.9 1.0 CD A:GLU394 2.9 28.3 1.0 CE1 A:HIS226 3.2 27.7 1.0 C4 A:92X502 3.2 35.7 1.0 OE2 A:GLU394 3.3 25.8 1.0 CE1 A:HIS308 3.3 19.6 1.0 CD2 A:HIS308 3.3 23.2 1.0 C8 A:92X502 3.3 39.6 1.0 CD2 A:HIS226 3.4 26.1 1.0 C5 A:92X502 3.8 32.0 1.0 CG A:GLU394 4.3 26.2 1.0 CG2 A:VAL228 4.4 20.2 1.0 ND1 A:HIS308 4.4 22.9 1.0 ND1 A:HIS226 4.4 29.8 1.0 CG A:HIS308 4.4 25.4 1.0 CE2 A:PHE381 4.5 31.0 1.0 CB A:ALA310 4.5 31.0 1.0 C3 A:92X502 4.5 45.1 1.0 CB A:GLU394 4.5 22.6 1.0 CG A:HIS226 4.5 28.9 1.0 C10 A:92X502 4.6 48.8 1.0 C17 A:92X502 4.8 26.6 1.0 O A:PHE419 4.8 34.9 1.0 CZ A:PHE381 4.9 35.0 1.0 CD2 A:PHE419 4.9 32.8 1.0

Cobalt binding site 2 out of 2 in the Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione-Methyl


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione-Methyl within 5.0Å range: probe atom residue distance (Å) B Occ B:Co501 b:29.1 occ:1.00 OE2 B:GLU394 2.1 26.0 1.0 O11 B:92X502 2.2 39.3 1.0 O9 B:92X502 2.2 39.1 1.0 O B:HOH601 2.2 28.4 1.0 NE2 B:HIS226 2.4 22.3 1.0 NE2 B:HIS308 2.4 27.7 1.0 CD B:GLU394 3.1 23.7 1.0 CD2 B:HIS226 3.1 24.0 1.0 C4 B:92X502 3.2 34.4 1.0 C8 B:92X502 3.2 38.8 1.0 CE1 B:HIS308 3.3 19.2 1.0 CD2 B:HIS308 3.4 25.1 1.0 OE1 B:GLU394 3.4 38.5 1.0 CE1 B:HIS226 3.5 22.1 1.0 C5 B:92X502 3.6 35.2 1.0 CB B:ALA310 4.0 21.4 1.0 CG2 B:VAL228 4.1 18.0 1.0 CG B:HIS226 4.4 19.7 1.0 ND1 B:HIS308 4.4 32.7 1.0 CG B:GLU394 4.4 21.7 1.0 C3 B:92X502 4.4 38.0 1.0 C10 B:92X502 4.5 47.8 1.0 ND1 B:HIS226 4.5 21.1 1.0 CG B:HIS308 4.5 21.2 1.0 O B:PHE419 4.6 36.1 1.0 CB B:GLU394 4.7 25.3 1.0 CD1 B:PHE419 4.8 24.3 1.0 CB B:PHE419 4.9 31.2 1.0 C6 B:92X502 4.9 43.9 1.0 C17 B:92X502 4.9 40.6 1.0 CE2 B:PHE381 4.9 34.9 1.0

W.C.Yang, H.Y.Lin. Crystal Structure of Arabidopsis Thaliana Hppd Complexed with Benquitrione-Methyl To Be Published.