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Cobalt in PDB 5zt2: Crystal Structure of Ccg Dna Repeats at 1.66 Angstrom Resolution

Protein crystallography data

The structure of Crystal Structure of Ccg Dna Repeats at 1.66 Angstrom Resolution, PDB code: 5zt2 was solved by M.H.Hou, P.C.Wu, R.B.Satange, Y.W.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 12.44 / 1.66
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 38.299, 38.299, 54.328, 90.00, 90.00, 90.00
R / Rfree (%) 23.3 / 25.5

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Ccg Dna Repeats at 1.66 Angstrom Resolution (pdb code 5zt2). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of Ccg Dna Repeats at 1.66 Angstrom Resolution, PDB code: 5zt2:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 5zt2

Go back to Cobalt Binding Sites List in 5zt2
Cobalt binding site 1 out of 2 in the Crystal Structure of Ccg Dna Repeats at 1.66 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Ccg Dna Repeats at 1.66 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co101

b:45.5
occ:0.86
O A:HOH226 2.0 44.4 1.0
O A:HOH216 2.3 30.0 1.0
N7 A:DG4 2.3 25.8 1.0
O A:HOH228 2.4 30.4 1.0
C8 A:DG4 3.2 27.8 1.0
C5 A:DG4 3.4 25.8 1.0
O6 A:DG4 3.7 24.3 1.0
C6 A:DG4 3.9 24.4 1.0
O A:HOH250 4.5 30.0 1.0
N9 A:DG4 4.5 24.8 1.0
C4 A:DG4 4.6 20.6 1.0
O A:HOH213 4.7 36.1 1.0
C2' A:DC3 4.9 18.8 1.0

Cobalt binding site 2 out of 2 in 5zt2

Go back to Cobalt Binding Sites List in 5zt2
Cobalt binding site 2 out of 2 in the Crystal Structure of Ccg Dna Repeats at 1.66 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Ccg Dna Repeats at 1.66 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co102

b:32.2
occ:0.57
N7 A:DG7 2.6 18.3 1.0
O A:HOH210 2.7 42.1 1.0
O A:HOH229 3.0 39.0 1.0
OP1 A:DC6 3.4 22.0 1.0
O A:HOH241 3.4 30.0 1.0
C8 A:DG7 3.5 19.2 1.0
C5 A:DG7 3.6 22.4 1.0
O6 A:DG7 3.7 23.9 1.0
O A:HOH214 3.8 30.0 1.0
C6 A:DG7 4.1 23.6 1.0
O A:HOH230 4.4 30.0 1.0
O5' A:DC5 4.4 34.5 1.0
P A:DC6 4.5 29.6 1.0
O3' A:DC5 4.6 33.7 1.0
OP1 A:DC5 4.6 35.0 1.0
N9 A:DG7 4.8 18.3 1.0
C3' A:DC5 4.8 36.4 1.0
C4 A:DG7 4.8 15.7 1.0

Reference:

M.H.Hou, M.H.Hou, P.C.Wu, R.B.Satange, Y.W.Chen. N/A N/A.
Page generated: Tue Jul 30 18:26:10 2024

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