Cobalt in PDB 6aue: Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- B
Protein crystallography data
The structure of Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- B, PDB code: 6aue
was solved by
L.Olshansky,
J.Vallapurakal,
R.Huerta-Lavorie,
A.I.Nguyen,
T.D.Tilley,
A.S.Borovik,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
37.45 /
1.36
|
Space group
|
I 41 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
57.945,
57.945,
184.565,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
20.3 /
22.9
|
Cobalt Binding Sites:
The binding sites of Cobalt atom in the Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- B
(pdb code 6aue). This binding sites where shown within
5.0 Angstroms radius around Cobalt atom.
In total 4 binding sites of Cobalt where determined in the
Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- B, PDB code: 6aue:
Jump to Cobalt binding site number:
1;
2;
3;
4;
Cobalt binding site 1 out
of 4 in 6aue
Go back to
Cobalt Binding Sites List in 6aue
Cobalt binding site 1 out
of 4 in the Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- B
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 1 of Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- B within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co201
b:50.4
occ:1.00
|
CO4
|
A:OL3201
|
0.0
|
50.4
|
1.0
|
O07
|
A:OL3201
|
1.9
|
48.7
|
1.0
|
O05
|
A:OL3201
|
2.0
|
44.8
|
1.0
|
O12
|
A:OL3201
|
2.0
|
41.7
|
1.0
|
O03
|
A:OL3201
|
2.0
|
50.3
|
1.0
|
O15
|
A:OL3201
|
2.1
|
50.1
|
1.0
|
N07
|
A:OL3201
|
2.3
|
49.7
|
1.0
|
CO2
|
A:OL3201
|
2.7
|
50.1
|
1.0
|
CO1
|
A:OL3201
|
2.9
|
57.8
|
1.0
|
CO3
|
A:OL3201
|
2.9
|
61.4
|
1.0
|
C04
|
A:OL3201
|
3.0
|
44.0
|
1.0
|
C44
|
A:OL3201
|
3.1
|
45.9
|
1.0
|
O14
|
A:OL3201
|
3.4
|
45.0
|
1.0
|
C40
|
A:OL3201
|
3.4
|
59.3
|
1.0
|
O06
|
A:OL3201
|
3.4
|
48.5
|
1.0
|
N04
|
A:OL3201
|
4.1
|
59.4
|
1.0
|
C37
|
A:OL3201
|
4.3
|
34.2
|
1.0
|
N05
|
A:OL3201
|
4.4
|
58.1
|
1.0
|
C18
|
A:OL3201
|
4.4
|
71.4
|
1.0
|
C43
|
A:OL3201
|
4.5
|
51.0
|
1.0
|
O09
|
A:OL3201
|
4.5
|
44.5
|
1.0
|
O
|
A:HOH354
|
4.5
|
45.2
|
1.0
|
C02
|
A:OL3201
|
4.6
|
21.9
|
1.0
|
C41
|
A:OL3201
|
4.6
|
43.7
|
1.0
|
O08
|
A:OL3201
|
4.6
|
44.7
|
1.0
|
O11
|
A:OL3201
|
4.7
|
53.7
|
1.0
|
O10
|
A:OL3201
|
4.7
|
57.1
|
1.0
|
C32
|
A:OL3201
|
4.7
|
64.0
|
1.0
|
|
Cobalt binding site 2 out
of 4 in 6aue
Go back to
Cobalt Binding Sites List in 6aue
Cobalt binding site 2 out
of 4 in the Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- B
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 2 of Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- B within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co201
b:57.8
occ:1.00
|
CO1
|
A:OL3201
|
0.0
|
57.8
|
1.0
|
O05
|
A:OL3201
|
1.9
|
44.8
|
1.0
|
O06
|
A:OL3201
|
2.0
|
48.5
|
1.0
|
O07
|
A:OL3201
|
2.1
|
48.7
|
1.0
|
O08
|
A:OL3201
|
2.1
|
44.7
|
1.0
|
O10
|
A:OL3201
|
2.1
|
57.1
|
1.0
|
N04
|
A:OL3201
|
2.6
|
59.4
|
1.0
|
CO3
|
A:OL3201
|
2.8
|
61.4
|
1.0
|
CO2
|
A:OL3201
|
2.8
|
50.1
|
1.0
|
CO4
|
A:OL3201
|
2.9
|
50.4
|
1.0
|
C16
|
A:OL3201
|
3.1
|
69.5
|
1.0
|
O11
|
A:OL3201
|
3.3
|
53.7
|
1.0
|
O12
|
A:OL3201
|
3.4
|
41.7
|
1.0
|
C18
|
A:OL3201
|
3.5
|
71.4
|
1.0
|
C22
|
A:OL3201
|
3.5
|
71.0
|
1.0
|
O09
|
A:OL3201
|
3.6
|
44.5
|
1.0
|
N07
|
A:OL3201
|
3.9
|
49.7
|
1.0
|
C40
|
A:OL3201
|
4.3
|
59.3
|
1.0
|
O03
|
A:OL3201
|
4.5
|
50.3
|
1.0
|
O14
|
A:OL3201
|
4.5
|
45.0
|
1.0
|
C17
|
A:OL3201
|
4.5
|
64.9
|
1.0
|
O15
|
A:OL3201
|
4.7
|
50.1
|
1.0
|
C19
|
A:OL3201
|
4.8
|
63.5
|
1.0
|
C21
|
A:OL3201
|
4.8
|
74.1
|
1.0
|
N05
|
A:OL3201
|
4.8
|
58.1
|
1.0
|
C44
|
A:OL3201
|
4.8
|
45.9
|
1.0
|
C04
|
A:OL3201
|
4.8
|
44.0
|
1.0
|
|
Cobalt binding site 3 out
of 4 in 6aue
Go back to
Cobalt Binding Sites List in 6aue
Cobalt binding site 3 out
of 4 in the Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- B
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 3 of Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- B within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co201
b:61.4
occ:1.00
|
CO3
|
A:OL3201
|
0.0
|
61.4
|
1.0
|
O06
|
A:OL3201
|
1.9
|
48.5
|
1.0
|
O12
|
A:OL3201
|
1.9
|
41.7
|
1.0
|
O07
|
A:OL3201
|
2.1
|
48.7
|
1.0
|
O11
|
A:OL3201
|
2.1
|
53.7
|
1.0
|
N06
|
A:OL3201
|
2.6
|
65.4
|
1.0
|
CO1
|
A:OL3201
|
2.8
|
57.8
|
1.0
|
CO2
|
A:OL3201
|
2.8
|
50.1
|
1.0
|
CO4
|
A:OL3201
|
2.9
|
50.4
|
1.0
|
C16
|
A:OL3201
|
3.1
|
69.5
|
1.0
|
C32
|
A:OL3201
|
3.3
|
64.0
|
1.0
|
O10
|
A:OL3201
|
3.4
|
57.1
|
1.0
|
C28
|
A:OL3201
|
3.4
|
84.8
|
1.0
|
O05
|
A:OL3201
|
3.5
|
44.8
|
1.0
|
N05
|
A:OL3201
|
3.6
|
58.1
|
1.0
|
C34
|
A:OL3201
|
3.6
|
81.2
|
1.0
|
O15
|
A:OL3201
|
3.7
|
50.1
|
1.0
|
O08
|
A:OL3201
|
4.4
|
44.7
|
1.0
|
C33
|
A:OL3201
|
4.5
|
72.0
|
1.0
|
O03
|
A:OL3201
|
4.5
|
50.3
|
1.0
|
C17
|
A:OL3201
|
4.6
|
64.9
|
1.0
|
O14
|
A:OL3201
|
4.6
|
45.0
|
1.0
|
O09
|
A:OL3201
|
4.7
|
44.5
|
1.0
|
C29
|
A:OL3201
|
4.8
|
94.3
|
1.0
|
C35
|
A:OL3201
|
4.8
|
88.0
|
1.0
|
N07
|
A:OL3201
|
4.9
|
49.7
|
1.0
|
C24
|
A:OL3201
|
4.9
|
63.9
|
1.0
|
C04
|
A:OL3201
|
5.0
|
44.0
|
1.0
|
|
Cobalt binding site 4 out
of 4 in 6aue
Go back to
Cobalt Binding Sites List in 6aue
Cobalt binding site 4 out
of 4 in the Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- B
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 4 of Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- B within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co201
b:50.1
occ:1.00
|
CO2
|
A:OL3201
|
0.0
|
50.1
|
1.0
|
O06
|
A:OL3201
|
2.0
|
48.5
|
1.0
|
O12
|
A:OL3201
|
2.1
|
41.7
|
1.0
|
O14
|
A:OL3201
|
2.1
|
45.0
|
1.0
|
O05
|
A:OL3201
|
2.1
|
44.8
|
1.0
|
O09
|
A:OL3201
|
2.2
|
44.5
|
1.0
|
N05
|
A:OL3201
|
2.3
|
58.1
|
1.0
|
CO4
|
A:OL3201
|
2.7
|
50.4
|
1.0
|
CO1
|
A:OL3201
|
2.8
|
57.8
|
1.0
|
CO3
|
A:OL3201
|
2.8
|
61.4
|
1.0
|
C04
|
A:OL3201
|
2.9
|
44.0
|
1.0
|
C32
|
A:OL3201
|
3.2
|
64.0
|
1.0
|
O03
|
A:OL3201
|
3.2
|
50.3
|
1.0
|
C24
|
A:OL3201
|
3.3
|
63.9
|
1.0
|
O07
|
A:OL3201
|
3.4
|
48.7
|
1.0
|
O08
|
A:OL3201
|
3.5
|
44.7
|
1.0
|
O
|
A:HOH301
|
4.1
|
38.3
|
1.0
|
C37
|
A:OL3201
|
4.3
|
34.2
|
1.0
|
O10
|
A:OL3201
|
4.4
|
57.1
|
1.0
|
O11
|
A:OL3201
|
4.4
|
53.7
|
1.0
|
O15
|
A:OL3201
|
4.4
|
50.1
|
1.0
|
N06
|
A:OL3201
|
4.4
|
65.4
|
1.0
|
C33
|
A:OL3201
|
4.6
|
72.0
|
1.0
|
C25
|
A:OL3201
|
4.6
|
63.2
|
1.0
|
N07
|
A:OL3201
|
4.7
|
49.7
|
1.0
|
C34
|
A:OL3201
|
4.8
|
81.2
|
1.0
|
C16
|
A:OL3201
|
4.8
|
69.5
|
1.0
|
CE1
|
A:TYR112
|
4.9
|
30.5
|
1.0
|
|
Reference:
L.Olshansky,
R.Huerta-Lavorie,
A.I.Nguyen,
J.Vallapurackal,
A.Furst,
T.D.Tilley,
A.S.Borovik.
Artificial Metalloproteins Containing Co J. Am. Chem. Soc. V. 140 2739 2018.
ISSN: ESSN 1520-5126
PubMed: 29401385
DOI: 10.1021/JACS.7B13052
Page generated: Tue Jul 30 18:26:55 2024
|