Cobalt in PDB 6auh: Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- A
Protein crystallography data
The structure of Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- A, PDB code: 6auh
was solved by
L.Olshansky,
J.Vallapurakal,
R.Huerta-Lavorie,
A.I.Nguyen,
T.D.Tilley,
A.S.Borovik,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
37.29 /
1.60
|
Space group
|
I 41 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
57.701,
57.701,
183.768,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19.5 /
21.9
|
Cobalt Binding Sites:
The binding sites of Cobalt atom in the Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- A
(pdb code 6auh). This binding sites where shown within
5.0 Angstroms radius around Cobalt atom.
In total 4 binding sites of Cobalt where determined in the
Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- A, PDB code: 6auh:
Jump to Cobalt binding site number:
1;
2;
3;
4;
Cobalt binding site 1 out
of 4 in 6auh
Go back to
Cobalt Binding Sites List in 6auh
Cobalt binding site 1 out
of 4 in the Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- A
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 1 of Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co201
b:43.0
occ:0.80
|
CO4
|
A:OL5201
|
0.0
|
43.0
|
0.8
|
O05
|
A:OL5201
|
1.8
|
41.1
|
0.8
|
O15
|
A:OL5201
|
1.9
|
38.4
|
0.8
|
O07
|
A:OL5201
|
1.9
|
42.3
|
0.8
|
O12
|
A:OL5201
|
2.0
|
32.4
|
0.8
|
O03
|
A:OL5201
|
2.0
|
39.7
|
0.8
|
N07
|
A:OL5201
|
2.3
|
43.4
|
0.8
|
CO2
|
A:OL5201
|
2.6
|
43.8
|
0.8
|
CO3
|
A:OL5201
|
2.6
|
50.9
|
0.8
|
CO1
|
A:OL5201
|
2.7
|
47.7
|
0.8
|
C04
|
A:OL5201
|
3.0
|
39.7
|
0.8
|
C40
|
A:OL5201
|
3.1
|
50.0
|
0.8
|
C44
|
A:OL5201
|
3.1
|
44.8
|
0.8
|
O06
|
A:OL5201
|
3.2
|
40.8
|
0.8
|
O14
|
A:OL5201
|
3.3
|
41.8
|
0.8
|
N05
|
A:OL5201
|
4.3
|
46.1
|
0.8
|
O09
|
A:OL5201
|
4.3
|
43.2
|
0.8
|
O11
|
A:OL5201
|
4.3
|
47.1
|
0.8
|
C37
|
A:OL5201
|
4.3
|
25.9
|
0.8
|
O08
|
A:OL5201
|
4.3
|
42.0
|
0.8
|
N06
|
A:OL5201
|
4.3
|
49.2
|
0.8
|
C41
|
A:OL5201
|
4.4
|
50.9
|
0.8
|
O10
|
A:OL5201
|
4.4
|
47.5
|
0.8
|
C43
|
A:OL5201
|
4.5
|
48.3
|
0.8
|
C02
|
A:OL5201
|
4.6
|
19.8
|
0.8
|
C32
|
A:OL5201
|
4.6
|
44.5
|
0.8
|
C28
|
A:OL5201
|
4.7
|
50.8
|
0.8
|
C16
|
A:OL5201
|
4.9
|
50.8
|
0.8
|
C42
|
A:OL5201
|
5.0
|
43.3
|
0.8
|
|
Cobalt binding site 2 out
of 4 in 6auh
Go back to
Cobalt Binding Sites List in 6auh
Cobalt binding site 2 out
of 4 in the Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- A
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 2 of Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co201
b:47.7
occ:0.80
|
CO1
|
A:OL5201
|
0.0
|
47.7
|
0.8
|
O05
|
A:OL5201
|
1.8
|
41.1
|
0.8
|
O10
|
A:OL5201
|
2.0
|
47.5
|
0.8
|
O06
|
A:OL5201
|
2.0
|
40.8
|
0.8
|
O07
|
A:OL5201
|
2.0
|
42.3
|
0.8
|
O08
|
A:OL5201
|
2.0
|
42.0
|
0.8
|
CO2
|
A:OL5201
|
2.7
|
43.8
|
0.8
|
CO4
|
A:OL5201
|
2.7
|
43.0
|
0.8
|
CO3
|
A:OL5201
|
2.7
|
50.9
|
0.8
|
C16
|
A:OL5201
|
2.9
|
50.8
|
0.8
|
O11
|
A:OL5201
|
3.1
|
47.1
|
0.8
|
O09
|
A:OL5201
|
3.3
|
43.2
|
0.8
|
O12
|
A:OL5201
|
3.5
|
32.4
|
0.8
|
N07
|
A:OL5201
|
3.5
|
43.4
|
0.8
|
C40
|
A:OL5201
|
4.0
|
50.0
|
0.8
|
O03
|
A:OL5201
|
4.2
|
39.7
|
0.8
|
C17
|
A:OL5201
|
4.3
|
48.0
|
0.8
|
O14
|
A:OL5201
|
4.3
|
41.8
|
0.8
|
C44
|
A:OL5201
|
4.3
|
44.8
|
0.8
|
O15
|
A:OL5201
|
4.3
|
38.4
|
0.8
|
N05
|
A:OL5201
|
4.4
|
46.1
|
0.8
|
N06
|
A:OL5201
|
4.6
|
49.2
|
0.8
|
C04
|
A:OL5201
|
4.7
|
39.7
|
0.8
|
C24
|
A:OL5201
|
4.8
|
53.0
|
0.8
|
|
Cobalt binding site 3 out
of 4 in 6auh
Go back to
Cobalt Binding Sites List in 6auh
Cobalt binding site 3 out
of 4 in the Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- A
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 3 of Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co201
b:50.9
occ:0.80
|
CO3
|
A:OL5201
|
0.0
|
50.9
|
0.8
|
O06
|
A:OL5201
|
1.8
|
40.8
|
0.8
|
O12
|
A:OL5201
|
1.8
|
32.4
|
0.8
|
O07
|
A:OL5201
|
1.9
|
42.3
|
0.8
|
O11
|
A:OL5201
|
2.1
|
47.1
|
0.8
|
N06
|
A:OL5201
|
2.1
|
49.2
|
0.8
|
CO4
|
A:OL5201
|
2.6
|
43.0
|
0.8
|
CO2
|
A:OL5201
|
2.7
|
43.8
|
0.8
|
CO1
|
A:OL5201
|
2.7
|
47.7
|
0.8
|
C28
|
A:OL5201
|
3.0
|
50.8
|
0.8
|
C34
|
A:OL5201
|
3.1
|
53.4
|
0.8
|
O15
|
A:OL5201
|
3.1
|
38.4
|
0.8
|
C16
|
A:OL5201
|
3.2
|
50.8
|
0.8
|
O05
|
A:OL5201
|
3.3
|
41.1
|
0.8
|
O10
|
A:OL5201
|
3.5
|
47.5
|
0.8
|
N05
|
A:OL5201
|
3.5
|
46.1
|
0.8
|
C32
|
A:OL5201
|
4.1
|
44.5
|
0.8
|
C24
|
A:OL5201
|
4.2
|
53.0
|
0.8
|
O03
|
A:OL5201
|
4.2
|
39.7
|
0.8
|
C29
|
A:OL5201
|
4.3
|
52.8
|
0.8
|
C35
|
A:OL5201
|
4.3
|
50.2
|
0.8
|
O08
|
A:OL5201
|
4.4
|
42.0
|
0.8
|
O14
|
A:OL5201
|
4.4
|
41.8
|
0.8
|
O09
|
A:OL5201
|
4.4
|
43.2
|
0.8
|
N07
|
A:OL5201
|
4.5
|
43.4
|
0.8
|
C17
|
A:OL5201
|
4.7
|
48.0
|
0.8
|
C04
|
A:OL5201
|
4.7
|
39.7
|
0.8
|
C30
|
A:OL5201
|
4.8
|
50.2
|
0.8
|
C40
|
A:OL5201
|
5.0
|
50.0
|
0.8
|
|
Cobalt binding site 4 out
of 4 in 6auh
Go back to
Cobalt Binding Sites List in 6auh
Cobalt binding site 4 out
of 4 in the Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- A
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 4 of Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112Y- A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co201
b:43.8
occ:0.80
|
CO2
|
A:OL5201
|
0.0
|
43.8
|
0.8
|
N05
|
A:OL5201
|
2.0
|
46.1
|
0.8
|
O14
|
A:OL5201
|
2.0
|
41.8
|
0.8
|
O05
|
A:OL5201
|
2.0
|
41.1
|
0.8
|
O06
|
A:OL5201
|
2.0
|
40.8
|
0.8
|
O09
|
A:OL5201
|
2.0
|
43.2
|
0.8
|
O12
|
A:OL5201
|
2.1
|
32.4
|
0.8
|
CO4
|
A:OL5201
|
2.6
|
43.0
|
0.8
|
CO1
|
A:OL5201
|
2.7
|
47.7
|
0.8
|
CO3
|
A:OL5201
|
2.7
|
50.9
|
0.8
|
C04
|
A:OL5201
|
2.8
|
39.7
|
0.8
|
C32
|
A:OL5201
|
2.8
|
44.5
|
0.8
|
C24
|
A:OL5201
|
2.9
|
53.0
|
0.8
|
O03
|
A:OL5201
|
3.0
|
39.7
|
0.8
|
O08
|
A:OL5201
|
3.3
|
42.0
|
0.8
|
O07
|
A:OL5201
|
3.3
|
42.3
|
0.8
|
N06
|
A:OL5201
|
3.5
|
49.2
|
0.8
|
O15
|
A:OL5201
|
4.1
|
38.4
|
0.8
|
C28
|
A:OL5201
|
4.1
|
50.8
|
0.8
|
O11
|
A:OL5201
|
4.2
|
47.1
|
0.8
|
C33
|
A:OL5201
|
4.2
|
45.7
|
0.8
|
C37
|
A:OL5201
|
4.2
|
25.9
|
0.8
|
C25
|
A:OL5201
|
4.2
|
52.6
|
0.8
|
O10
|
A:OL5201
|
4.2
|
47.5
|
0.8
|
C34
|
A:OL5201
|
4.2
|
53.4
|
0.8
|
N07
|
A:OL5201
|
4.4
|
43.4
|
0.8
|
C16
|
A:OL5201
|
4.7
|
50.8
|
0.8
|
C26
|
A:OL5201
|
4.7
|
53.2
|
0.8
|
CE1
|
A:TYR112
|
4.8
|
35.2
|
1.0
|
CZ
|
A:TYR112
|
4.9
|
39.2
|
1.0
|
C44
|
A:OL5201
|
4.9
|
44.8
|
0.8
|
OH
|
A:TYR112
|
5.0
|
46.0
|
1.0
|
|
Reference:
L.Olshansky,
R.Huerta-Lavorie,
A.I.Nguyen,
J.Vallapurackal,
A.Furst,
T.D.Tilley,
A.S.Borovik.
Artificial Metalloproteins Containing Co J. Am. Chem. Soc. V. 140 2739 2018.
ISSN: ESSN 1520-5126
PubMed: 29401385
DOI: 10.1021/JACS.7B13052
Page generated: Tue Jul 30 18:26:56 2024
|