Cobalt in PDB 6auo: Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112F
Protein crystallography data
The structure of Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112F, PDB code: 6auo
was solved by
L.Olshansky,
J.Vallapurakal,
R.Huerta-Lavorie,
A.I.Nguyen,
T.D.Tilley,
A.S.Borovik,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
54.92 /
1.70
|
Space group
|
I 41 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
57.555,
57.555,
183.719,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19 /
22.2
|
Cobalt Binding Sites:
The binding sites of Cobalt atom in the Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112F
(pdb code 6auo). This binding sites where shown within
5.0 Angstroms radius around Cobalt atom.
In total 4 binding sites of Cobalt where determined in the
Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112F, PDB code: 6auo:
Jump to Cobalt binding site number:
1;
2;
3;
4;
Cobalt binding site 1 out
of 4 in 6auo
Go back to
Cobalt Binding Sites List in 6auo
Cobalt binding site 1 out
of 4 in the Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112F
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 1 of Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112F within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co201
b:55.7
occ:1.00
|
CO4
|
A:OL4201
|
0.0
|
55.7
|
1.0
|
O12
|
A:OL4201
|
1.9
|
33.7
|
1.0
|
O05
|
A:OL4201
|
2.0
|
53.3
|
1.0
|
O07
|
A:OL4201
|
2.0
|
50.8
|
1.0
|
O03
|
A:OL4201
|
2.1
|
48.5
|
1.0
|
O15
|
A:OL4201
|
2.1
|
47.1
|
1.0
|
CO2
|
A:OL4201
|
2.6
|
51.6
|
1.0
|
CO1
|
A:OL4201
|
2.9
|
63.0
|
1.0
|
CO3
|
A:OL4201
|
2.9
|
67.7
|
1.0
|
C04
|
A:OL4201
|
3.0
|
43.4
|
1.0
|
O06
|
A:OL4201
|
3.3
|
55.9
|
1.0
|
O14
|
A:OL4201
|
3.3
|
46.2
|
1.0
|
CE1
|
A:PHE112
|
3.6
|
42.2
|
1.0
|
CZ
|
A:PHE112
|
4.1
|
44.8
|
1.0
|
N06
|
A:OL4201
|
4.2
|
68.4
|
1.0
|
CD1
|
A:PHE112
|
4.3
|
41.9
|
1.0
|
N05
|
A:OL4201
|
4.3
|
52.7
|
1.0
|
O09
|
A:OL4201
|
4.3
|
51.7
|
1.0
|
C37
|
A:OL4201
|
4.4
|
29.0
|
1.0
|
C32
|
A:OL4201
|
4.5
|
43.0
|
1.0
|
C28
|
A:OL4201
|
4.6
|
60.3
|
1.0
|
O10
|
A:OL4201
|
4.7
|
53.4
|
1.0
|
C02
|
A:OL4201
|
4.8
|
21.8
|
1.0
|
|
Cobalt binding site 2 out
of 4 in 6auo
Go back to
Cobalt Binding Sites List in 6auo
Cobalt binding site 2 out
of 4 in the Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112F
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 2 of Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112F within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co201
b:63.0
occ:1.00
|
CO1
|
A:OL4201
|
0.0
|
63.0
|
1.0
|
O07
|
A:OL4201
|
1.9
|
50.8
|
1.0
|
O05
|
A:OL4201
|
1.9
|
53.3
|
1.0
|
O06
|
A:OL4201
|
1.9
|
55.9
|
1.0
|
O10
|
A:OL4201
|
2.2
|
53.4
|
1.0
|
CO4
|
A:OL4201
|
2.9
|
55.7
|
1.0
|
CO3
|
A:OL4201
|
2.9
|
67.7
|
1.0
|
CO2
|
A:OL4201
|
2.9
|
51.6
|
1.0
|
O12
|
A:OL4201
|
3.5
|
33.7
|
1.0
|
O09
|
A:OL4201
|
3.6
|
51.7
|
1.0
|
N06
|
A:OL4201
|
4.3
|
68.4
|
1.0
|
O03
|
A:OL4201
|
4.6
|
48.5
|
1.0
|
C34
|
A:OL4201
|
4.6
|
69.1
|
1.0
|
O15
|
A:OL4201
|
4.7
|
47.1
|
1.0
|
O14
|
A:OL4201
|
4.7
|
46.2
|
1.0
|
N05
|
A:OL4201
|
4.8
|
52.7
|
1.0
|
|
Cobalt binding site 3 out
of 4 in 6auo
Go back to
Cobalt Binding Sites List in 6auo
Cobalt binding site 3 out
of 4 in the Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112F
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 3 of Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112F within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co201
b:67.7
occ:1.00
|
CO3
|
A:OL4201
|
0.0
|
67.7
|
1.0
|
N06
|
A:OL4201
|
1.7
|
68.4
|
1.0
|
O06
|
A:OL4201
|
1.9
|
55.9
|
1.0
|
O07
|
A:OL4201
|
2.0
|
50.8
|
1.0
|
O12
|
A:OL4201
|
2.0
|
33.7
|
1.0
|
C28
|
A:OL4201
|
2.6
|
60.3
|
1.0
|
C34
|
A:OL4201
|
2.6
|
69.1
|
1.0
|
CO4
|
A:OL4201
|
2.9
|
55.7
|
1.0
|
CO1
|
A:OL4201
|
2.9
|
63.0
|
1.0
|
CO2
|
A:OL4201
|
2.9
|
51.6
|
1.0
|
O10
|
A:OL4201
|
3.2
|
53.4
|
1.0
|
O15
|
A:OL4201
|
3.5
|
47.1
|
1.0
|
O05
|
A:OL4201
|
3.5
|
53.3
|
1.0
|
N05
|
A:OL4201
|
3.8
|
52.7
|
1.0
|
C35
|
A:OL4201
|
3.8
|
79.7
|
1.0
|
C29
|
A:OL4201
|
3.9
|
81.4
|
1.0
|
C32
|
A:OL4201
|
4.1
|
43.0
|
1.0
|
C30
|
A:OL4201
|
4.3
|
81.7
|
1.0
|
O03
|
A:OL4201
|
4.6
|
48.5
|
1.0
|
O14
|
A:OL4201
|
4.7
|
46.2
|
1.0
|
C24
|
A:OL4201
|
4.7
|
59.5
|
1.0
|
O09
|
A:OL4201
|
4.7
|
51.7
|
1.0
|
|
Cobalt binding site 4 out
of 4 in 6auo
Go back to
Cobalt Binding Sites List in 6auo
Cobalt binding site 4 out
of 4 in the Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112F
Mono view
Stereo pair view
|
A full contact list of Cobalt with other atoms in the Co binding
site number 4 of Artificial Metalloproteins Containing A CO4O4 Active Site - 2XM-S112F within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Co201
b:51.6
occ:1.00
|
CO2
|
A:OL4201
|
0.0
|
51.6
|
1.0
|
O12
|
A:OL4201
|
1.9
|
33.7
|
1.0
|
O05
|
A:OL4201
|
2.0
|
53.3
|
1.0
|
O06
|
A:OL4201
|
2.1
|
55.9
|
1.0
|
N05
|
A:OL4201
|
2.1
|
52.7
|
1.0
|
O09
|
A:OL4201
|
2.1
|
51.7
|
1.0
|
O14
|
A:OL4201
|
2.1
|
46.2
|
1.0
|
CO4
|
A:OL4201
|
2.6
|
55.7
|
1.0
|
CO1
|
A:OL4201
|
2.9
|
63.0
|
1.0
|
CO3
|
A:OL4201
|
2.9
|
67.7
|
1.0
|
C04
|
A:OL4201
|
3.0
|
43.4
|
1.0
|
C32
|
A:OL4201
|
3.0
|
43.0
|
1.0
|
C24
|
A:OL4201
|
3.0
|
59.5
|
1.0
|
O03
|
A:OL4201
|
3.2
|
48.5
|
1.0
|
O07
|
A:OL4201
|
3.3
|
50.8
|
1.0
|
N06
|
A:OL4201
|
3.5
|
68.4
|
1.0
|
C34
|
A:OL4201
|
3.8
|
69.1
|
1.0
|
O15
|
A:OL4201
|
4.2
|
47.1
|
1.0
|
C28
|
A:OL4201
|
4.3
|
60.3
|
1.0
|
C33
|
A:OL4201
|
4.3
|
56.5
|
1.0
|
C25
|
A:OL4201
|
4.3
|
65.0
|
1.0
|
C37
|
A:OL4201
|
4.4
|
29.0
|
1.0
|
O10
|
A:OL4201
|
4.5
|
53.4
|
1.0
|
C35
|
A:OL4201
|
4.7
|
79.7
|
1.0
|
C26
|
A:OL4201
|
4.9
|
59.2
|
1.0
|
|
Reference:
L.Olshansky,
R.Huerta-Lavorie,
A.I.Nguyen,
J.Vallapurackal,
A.Furst,
T.D.Tilley,
A.S.Borovik.
Artificial Metalloproteins Containing Co J. Am. Chem. Soc. V. 140 2739 2018.
ISSN: ESSN 1520-5126
PubMed: 29401385
DOI: 10.1021/JACS.7B13052
Page generated: Tue Jul 30 18:26:55 2024
|