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Cobalt in PDB 6bnx: Crystal Structure of V278E-Glyoxalase I Mutant From Zea Mays in Space Group P6(3)

Enzymatic activity of Crystal Structure of V278E-Glyoxalase I Mutant From Zea Mays in Space Group P6(3)

All present enzymatic activity of Crystal Structure of V278E-Glyoxalase I Mutant From Zea Mays in Space Group P6(3):
4.4.1.5;

Protein crystallography data

The structure of Crystal Structure of V278E-Glyoxalase I Mutant From Zea Mays in Space Group P6(3), PDB code: 6bnx was solved by C.E.Alvarez, R.B.Agostini, J.M.Gonzalez, M.F.Drincovich, V.A.Camposbermudez, S.Klinke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.05 / 1.80
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 82.110, 82.110, 74.970, 90.00, 90.00, 120.00
R / Rfree (%) 18.3 / 22.4

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of V278E-Glyoxalase I Mutant From Zea Mays in Space Group P6(3) (pdb code 6bnx). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of V278E-Glyoxalase I Mutant From Zea Mays in Space Group P6(3), PDB code: 6bnx:

Cobalt binding site 1 out of 1 in 6bnx

Go back to Cobalt Binding Sites List in 6bnx
Cobalt binding site 1 out of 1 in the Crystal Structure of V278E-Glyoxalase I Mutant From Zea Mays in Space Group P6(3)


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of V278E-Glyoxalase I Mutant From Zea Mays in Space Group P6(3) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co301

b:32.2
occ:0.50
O A:HOH410 1.8 21.3 0.5
O A:HOH517 1.9 32.6 0.5
NE2 A:HIS96 2.1 35.1 1.0
OE1 A:GLN157 2.1 33.1 1.0
OE1 A:GLU144 2.2 37.8 1.0
OE1 A:GLU208 2.3 34.4 1.0
CE1 A:HIS96 2.9 33.6 1.0
CD A:GLN157 3.2 31.0 1.0
CD2 A:HIS96 3.3 32.5 1.0
CD A:GLU208 3.3 38.9 1.0
CD A:GLU144 3.3 35.9 1.0
OE2 A:GLU208 3.7 45.0 1.0
NE2 A:GLN157 3.7 29.7 1.0
OE2 A:GLU144 3.9 44.1 1.0
ND1 A:HIS96 4.1 33.2 1.0
CG A:HIS96 4.3 31.7 1.0
CG A:GLU144 4.5 29.5 1.0
CB A:GLU144 4.5 30.2 1.0
CG A:GLN157 4.6 28.3 1.0
CB A:MET159 4.6 29.9 1.0
CG A:GLU208 4.7 33.9 1.0
CG A:MET159 4.7 33.2 1.0
CB A:GLN157 4.8 27.1 1.0
CD1 A:ILE146 4.8 31.5 1.0
CB A:ALA98 4.8 27.2 1.0
CB A:GLU208 5.0 33.0 1.0

Reference:

J.M.Gonzalez, R.B.Agostini, C.E.Alvarez, S.Klinke, C.S.Andreo, V.A.Campos-Bermudez. Deciphering the Number and Location of Active Sites in the Monomeric Glyoxalase I of Zea Mays. Febs J. V. 286 3255 2019.
ISSN: ISSN 1742-464X
PubMed: 30993890
DOI: 10.1111/FEBS.14855
Page generated: Sun Dec 13 10:49:43 2020

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