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Cobalt in PDB 6cci: The Crystal Structure of XOAT1

Protein crystallography data

The structure of The Crystal Structure of XOAT1, PDB code: 6cci was solved by P.M.Alahuhta, V.V.Lunin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 69.26 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.431, 58.169, 138.528, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 21.9

Other elements in 6cci:

The structure of The Crystal Structure of XOAT1 also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Cobalt Binding Sites:

The binding sites of Cobalt atom in the The Crystal Structure of XOAT1 (pdb code 6cci). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the The Crystal Structure of XOAT1, PDB code: 6cci:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 6cci

Go back to Cobalt Binding Sites List in 6cci
Cobalt binding site 1 out of 2 in the The Crystal Structure of XOAT1


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of The Crystal Structure of XOAT1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co501

b:15.0
occ:1.00
O A:HOH957 2.0 15.7 1.0
O A:HOH621 2.1 15.6 1.0
OE2 A:GLU146 2.3 18.1 1.0
CD A:GLU146 3.3 25.0 1.0
OE1 A:GLU146 3.6 28.9 1.0
O A:HOH926 3.9 23.5 1.0
O A:HOH1009 4.1 34.5 1.0
CG A:GLU146 4.6 21.0 1.0
O A:HOH788 4.9 16.2 1.0

Cobalt binding site 2 out of 2 in 6cci

Go back to Cobalt Binding Sites List in 6cci
Cobalt binding site 2 out of 2 in the The Crystal Structure of XOAT1


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of The Crystal Structure of XOAT1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co502

b:40.7
occ:0.50
NH1 A:ARG358 2.2 45.0 1.0
O A:HOH645 2.3 36.0 1.0
O6 A:NAG505 2.6 43.7 1.0
CZ A:ARG358 3.0 48.2 1.0
NH2 A:ARG358 3.0 40.5 1.0
O4 A:NAG505 3.2 51.8 1.0
C6 A:NAG505 3.7 43.4 1.0
C4 A:NAG505 3.9 45.8 1.0
O A:GLY298 4.0 36.3 1.0
NE A:ARG358 4.2 52.0 1.0
OD2 A:ASP300 4.4 17.1 1.0
C5 A:NAG505 4.4 45.8 1.0
O A:ASN207 4.7 25.5 1.0
O A:HOH916 4.8 27.8 1.0
OD1 A:ASP300 4.9 20.7 1.0

Reference:

P.M.Alahuhta, V.V.Lunin. The Crystal Structure of XOAT1 Reveals the Mechanism of Polysaccharide Acetylation To Be Published.
Page generated: Tue Jul 30 18:29:18 2024

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