Cobalt in PDB 6jre: Structure of N-Terminal Domain of Plasmodium Vivax P43 (Pfntd) Solved By Co-Sad Phasing

The structure of Structure of N-Terminal Domain of Plasmodium Vivax P43 (Pfntd) Solved By Co-Sad Phasing, PDB code: 6jre was solved by Y.Manickam, K.Harlos, M.Sharma, S.Gupta, A.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	61.80 / 2.59
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	87.396, 87.396, 53.412, 90.00, 90.00, 90.00
R / Rfree (%)	22 / 27.4

The binding sites of Cobalt atom in the Structure of N-Terminal Domain of Plasmodium Vivax P43 (Pfntd) Solved By Co-Sad Phasing (pdb code 6jre). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Structure of N-Terminal Domain of Plasmodium Vivax P43 (Pfntd) Solved By Co-Sad Phasing, PDB code: 6jre:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Structure of N-Terminal Domain of Plasmodium Vivax P43 (Pfntd) Solved By Co-Sad Phasing


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of N-Terminal Domain of Plasmodium Vivax P43 (Pfntd) Solved By Co-Sad Phasing within 5.0Å range: probe atom residue distance (Å) B Occ B:Co201 b:0.1 occ:0.69 NE2 B:HIS91 2.2 0.6 1.0 CE1 B:HIS91 2.5 0.1 1.0 OD2 B:ASP95 2.6 0.6 1.0 OD1 B:ASP95 3.3 0.7 1.0 CG B:ASP95 3.3 0.9 1.0 CD2 B:HIS91 3.5 0.5 1.0 ND1 B:HIS91 3.7 0.5 1.0 CG B:HIS91 4.2 0.8 1.0 OD2 B:ASP103 4.3 0.8 1.0 CB B:ASP95 4.8 0.1 1.0

Cobalt binding site 2 out of 2 in the Structure of N-Terminal Domain of Plasmodium Vivax P43 (Pfntd) Solved By Co-Sad Phasing


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Structure of N-Terminal Domain of Plasmodium Vivax P43 (Pfntd) Solved By Co-Sad Phasing within 5.0Å range: probe atom residue distance (Å) B Occ B:Co202 b:88.9 occ:0.55 NE2 B:HIS122 2.2 0.7 1.0 OD1 B:ASP78 2.6 0.2 1.0 OD2 B:ASP78 2.7 0.9 1.0 OE2 B:GLU79 2.9 0.8 1.0 CD2 B:HIS122 3.0 0.2 1.0 CG B:ASP78 3.0 0.1 1.0 CE1 B:HIS122 3.0 0.3 1.0 ND2 B:ASN76 3.4 88.1 1.0 ND1 B:HIS122 4.0 0.0 1.0 CG B:HIS122 4.0 0.2 1.0 CD B:GLU79 4.1 0.6 1.0 CB B:ARG121 4.4 0.5 1.0 CG B:ASN76 4.5 90.2 1.0 CG B:GLU79 4.5 0.4 1.0 CB B:ASP78 4.5 0.3 1.0 CA B:ASN76 4.5 82.8 1.0 CD B:ARG121 4.6 0.1 1.0 NH1 B:ARG121 4.6 0.8 1.0 CB B:ASN76 4.8 87.4 1.0 CG B:ARG121 4.8 0.2 1.0

S.Gupta, J.Chhibber-Goel, M.Sharma, S.Parvez, K.Harlos, A.Sharma, M.Yogavel. Crystal Structures of the Two Domains That Constitute the Plasmodium Vivax P43 Protein. Acta Crystallogr D Struct V. 76 135 2020BIOL.
ISSN: ISSN 2059-7983
PubMed: 32038044
DOI: 10.1107/S2059798319016413