Cobalt in PDB 6jv6: Crystal Structure of the Sirohydrochlorin Chelatase Sirb From Bacillus Subtilis Subspecies Spizizenii in Complex with Cobalt

All present enzymatic activity of Crystal Structure of the Sirohydrochlorin Chelatase Sirb From Bacillus Subtilis Subspecies Spizizenii in Complex with Cobalt:
4.99.1.3; 4.99.1.4;

The structure of Crystal Structure of the Sirohydrochlorin Chelatase Sirb From Bacillus Subtilis Subspecies Spizizenii in Complex with Cobalt, PDB code: 6jv6 was solved by M.S.Nam, W.S.Song, S.C.Park, S.I.Yoon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.15
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	75.669, 75.669, 82.419, 90.00, 90.00, 120.00
R / Rfree (%)	20.4 / 24.8

The binding sites of Cobalt atom in the Crystal Structure of the Sirohydrochlorin Chelatase Sirb From Bacillus Subtilis Subspecies Spizizenii in Complex with Cobalt (pdb code 6jv6). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of the Sirohydrochlorin Chelatase Sirb From Bacillus Subtilis Subspecies Spizizenii in Complex with Cobalt, PDB code: 6jv6:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Crystal Structure of the Sirohydrochlorin Chelatase Sirb From Bacillus Subtilis Subspecies Spizizenii in Complex with Cobalt


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of the Sirohydrochlorin Chelatase Sirb From Bacillus Subtilis Subspecies Spizizenii in Complex with Cobalt within 5.0Å range: probe atom residue distance (Å) B Occ A:Co301 b:31.2 occ:1.00 O A:HOH414 2.0 30.1 1.0 NE2 A:HIS10 2.1 29.7 1.0 NE2 A:HIS76 2.1 32.0 1.0 O A:HOH425 2.2 34.8 1.0 CD2 A:HIS10 3.0 28.1 1.0 CE1 A:HIS76 3.1 31.1 1.0 CD2 A:HIS76 3.1 28.8 1.0 CE1 A:HIS10 3.2 30.5 1.0 CG A:HIS10 4.2 29.6 1.0 ND1 A:HIS76 4.2 27.1 1.0 ND1 A:HIS10 4.2 30.2 1.0 CG A:HIS76 4.3 27.7 1.0

Cobalt binding site 2 out of 2 in the Crystal Structure of the Sirohydrochlorin Chelatase Sirb From Bacillus Subtilis Subspecies Spizizenii in Complex with Cobalt


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of the Sirohydrochlorin Chelatase Sirb From Bacillus Subtilis Subspecies Spizizenii in Complex with Cobalt within 5.0Å range: probe atom residue distance (Å) B Occ A:Co302 b:23.2 occ:1.00 OE2 A:GLU83 2.1 28.8 1.0 NE2 A:HIS79 2.1 25.2 1.0 OE1 A:GLU83 2.4 29.5 1.0 CD A:GLU83 2.6 28.6 1.0 CE1 A:HIS79 3.1 23.5 1.0 CD2 A:HIS79 3.1 27.1 1.0 CG A:GLU83 4.1 26.5 1.0 ND1 A:HIS79 4.2 20.9 1.0 CG A:HIS79 4.2 25.9 1.0 O A:HOH420 4.6 39.0 1.0

M.S.Nam, W.S.Song, S.C.Park, S.I.Yoon. Cobalt Complex Structure of the Sirohydrochlorin Chelatase Sirb From Bacillus Subtilis Subsp. Spizizenii. Korean J Microbiol. V. 55 123 2019.
ISSN: ISSN 0440-2413
DOI: 10.7845/KJM.2019.9042