Cobalt in PDB 6kdc: Crystal Structure of FPGLU1 From Fervidobacterium Pennivoraus

The structure of Crystal Structure of FPGLU1 From Fervidobacterium Pennivoraus, PDB code: 6kdc was solved by S.Yu, C.Liuqing, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.63 / 1.85
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	63.040, 101.397, 170.542, 90.00, 90.00, 90.00
R / Rfree (%)	15.4 / 18

The binding sites of Cobalt atom in the Crystal Structure of FPGLU1 From Fervidobacterium Pennivoraus (pdb code 6kdc). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of FPGLU1 From Fervidobacterium Pennivoraus, PDB code: 6kdc:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Crystal Structure of FPGLU1 From Fervidobacterium Pennivoraus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of FPGLU1 From Fervidobacterium Pennivoraus within 5.0Å range: probe atom residue distance (Å) B Occ A:Co506 b:81.6 occ:1.00 O3 A:GOL503 3.9 42.0 1.0 O2 A:GOL503 4.1 42.5 1.0 O A:THR257 4.3 19.8 1.0 C3 A:GOL503 4.3 45.0 1.0 O A:LEU258 4.4 21.1 1.0 O1 A:GOL503 4.5 39.4 1.0 C2 A:GOL503 4.6 47.4 1.0 CA A:LEU258 4.6 21.1 1.0 CE2 A:TYR320 4.7 26.7 1.0 C1 A:GOL503 4.7 49.4 1.0 NH1 A:ARG295 4.7 17.7 1.0 OH A:TYR320 4.8 24.5 1.0 CG1 A:VAL297 4.8 16.9 1.0 CZ A:TYR320 4.8 25.1 1.0 CG2 A:VAL297 4.8 16.5 1.0 CD1 A:LEU258 4.9 26.4 1.0 C A:LEU258 4.9 25.6 1.0

Cobalt binding site 2 out of 2 in the Crystal Structure of FPGLU1 From Fervidobacterium Pennivoraus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of FPGLU1 From Fervidobacterium Pennivoraus within 5.0Å range: probe atom residue distance (Å) B Occ A:Co507 b:82.1 occ:1.00 OH A:TYR64 3.6 24.1 1.0 NZ A:LYS120 3.7 52.7 1.0 CE1 A:HIS117 3.8 27.9 1.0 NH1 A:ARG62 3.8 55.4 1.0 CE1 A:TYR64 4.0 19.9 1.0 CZ A:TYR64 4.3 21.6 1.0 ND1 A:HIS117 4.4 21.8 1.0 CE A:LYS120 4.5 53.4 1.0 CD A:ARG62 4.5 38.0 1.0 NE2 A:HIS117 4.8 26.4 1.0 CZ A:ARG62 5.0 53.8 1.0 O A:TRP61 5.0 18.9 1.0

S.Yu, S.Yu, C.Liuqing. N/A N/A.