Cobalt in PDB 6m00: Crystal Structure of Methionine Aminopeptidase From Pyrococcus Furiosus

All present enzymatic activity of Crystal Structure of Methionine Aminopeptidase From Pyrococcus Furiosus:
3.4.11.18;

The structure of Crystal Structure of Methionine Aminopeptidase From Pyrococcus Furiosus, PDB code: 6m00 was solved by C.B.Sandeep, A.Addlagatta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.79 / 3.20
Space group	P 62
Cell size a, b, c (Å), α, β, γ (°)	137.684, 137.684, 61.332, 90, 90, 120
R / Rfree (%)	24.3 / 27.6

The binding sites of Cobalt atom in the Crystal Structure of Methionine Aminopeptidase From Pyrococcus Furiosus (pdb code 6m00). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of Methionine Aminopeptidase From Pyrococcus Furiosus, PDB code: 6m00:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Crystal Structure of Methionine Aminopeptidase From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Methionine Aminopeptidase From Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ A:Co301 b:67.4 occ:0.50 OE1 A:GLU280 2.0 41.3 1.0 CO A:CO302 2.1 67.4 0.5 OD2 A:ASP82 2.3 41.1 1.0 OD1 A:ASP93 2.4 40.9 1.0 OD1 A:ASP82 2.6 41.4 1.0 CD A:GLU280 2.8 41.6 1.0 CG A:ASP82 2.8 41.6 1.0 OE2 A:GLU280 3.0 41.0 1.0 CG A:ASP93 3.1 40.5 1.0 OD2 A:ASP93 3.2 39.7 1.0 OE1 A:GLU187 3.7 41.1 1.0 CZ A:PHE50 4.0 40.2 1.0 OE2 A:GLU187 4.1 39.8 1.0 CD A:GLU187 4.1 40.7 1.0 CG A:GLU280 4.2 43.1 1.0 CB A:ASP82 4.3 42.7 1.0 NE2 A:HIS153 4.5 39.1 1.0 CE2 A:PHE50 4.5 39.5 1.0 CB A:ASP93 4.6 41.6 1.0 NE2 A:GLN278 4.7 43.2 1.0 CE1 A:PHE50 4.9 40.5 1.0

Cobalt binding site 2 out of 2 in the Crystal Structure of Methionine Aminopeptidase From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Methionine Aminopeptidase From Pyrococcus Furiosus within 5.0Å range: probe atom residue distance (Å) B Occ A:Co302 b:67.4 occ:0.50 CO A:CO301 2.1 67.4 0.5 NE2 A:HIS153 2.6 39.1 1.0 OE2 A:GLU187 2.7 39.8 1.0 OE2 A:GLU280 3.1 41.0 1.0 OD2 A:ASP93 3.2 39.7 1.0 CD A:GLU187 3.2 40.7 1.0 CE1 A:HIS153 3.4 39.1 1.0 OE1 A:GLU280 3.4 41.3 1.0 OE1 A:GLU187 3.5 41.1 1.0 CD2 A:HIS153 3.7 39.4 1.0 CD A:GLU280 3.7 41.6 1.0 OD1 A:ASP93 3.8 40.9 1.0 CG A:ASP93 3.9 40.5 1.0 OD2 A:ASP82 3.9 41.1 1.0 CG A:GLU187 4.4 41.6 1.0 ND1 A:HIS153 4.6 39.5 1.0 NE2 A:HIS161 4.6 37.7 1.0 OD1 A:ASP82 4.7 41.4 1.0 CG A:ASP82 4.7 41.6 1.0 CG A:HIS153 4.8 39.6 1.0 CB A:ALA185 5.0 41.5 1.0

C.B.Sandeep, A.Addlagatta. Crystal Structure of Methionine Aminopeptidase From Pyrococcus Furiosus To Be Published.