Cobalt in PDB 6oby: The Nucleotide-Binding Protein AF_226 in Complex with Adp From Archaeoglobus Fulgidus with Co Found By Pixe. Based on 3KB1.

The structure of The Nucleotide-Binding Protein AF_226 in Complex with Adp From Archaeoglobus Fulgidus with Co Found By Pixe. Based on 3KB1., PDB code: 6oby was solved by E.H.Snell, E.F.Garman, E.D.Lowe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.54 / 2.87
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	51.440, 67.682, 79.403, 90.00, 90.09, 90.00
R / Rfree (%)	21.7 / 28.4

The binding sites of Cobalt atom in the The Nucleotide-Binding Protein AF_226 in Complex with Adp From Archaeoglobus Fulgidus with Co Found By Pixe. Based on 3KB1. (pdb code 6oby). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the The Nucleotide-Binding Protein AF_226 in Complex with Adp From Archaeoglobus Fulgidus with Co Found By Pixe. Based on 3KB1., PDB code: 6oby:

Cobalt binding site 1 out of 1 in the The Nucleotide-Binding Protein AF_226 in Complex with Adp From Archaeoglobus Fulgidus with Co Found By Pixe. Based on 3KB1.


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of The Nucleotide-Binding Protein AF_226 in Complex with Adp From Archaeoglobus Fulgidus with Co Found By Pixe. Based on 3KB1. within 5.0Å range: probe atom residue distance (Å) B Occ A:Co302 b:65.0 occ:1.00 SG B:CYS199 2.0 69.7 1.0 SG A:CYS199 2.2 62.3 1.0 SG A:CYS196 2.3 58.8 1.0 SG B:CYS196 2.3 58.8 1.0 CB B:CYS196 3.1 55.2 1.0 CB A:CYS196 3.1 55.3 1.0 CB B:CYS199 3.3 63.8 1.0 CB A:CYS199 3.4 61.1 1.0 ND2 A:ASN198 3.8 66.7 1.0 N B:CYS199 3.9 58.2 1.0 N A:CYS199 3.9 60.8 1.0 ND2 B:ASN198 3.9 65.3 1.0 CA B:CYS199 4.1 60.3 1.0 CB B:GLU201 4.1 67.5 1.0 CA A:CYS199 4.2 59.2 1.0 CB A:ASN198 4.4 69.3 1.0 CB A:GLU201 4.4 68.8 1.0 CB B:ASN198 4.5 66.2 1.0 CA B:CYS196 4.5 53.2 1.0 CA A:CYS196 4.6 53.0 1.0 CG A:ASN198 4.6 71.0 1.0 C B:CYS199 4.6 60.8 1.0 N B:GLU201 4.7 60.2 1.0 CG B:ASN198 4.7 68.0 1.0 C A:CYS199 4.8 58.9 1.0 C B:ASN198 4.9 59.1 1.0 C A:ASN198 4.9 60.5 1.0 N B:GLY200 4.9 63.1 1.0 N A:GLU201 5.0 59.1 1.0 C B:CYS196 5.0 54.2 1.0

G.W.Grime, O.Zeldin, M.E.Snell, E.D.Lowe, J.F.Hunt, G.T.Montelione, L.Tong, E.H.Snell, E.F.Garman. High-Throughput Pixe As An Essential Quantitative Assay For Accurate Metalloprotein Structural Analysis; Development and Application. J.Am.Chem.Soc. 2019.
ISSN: ESSN 1520-5126
PubMed: 31794207
DOI: 10.1021/JACS.9B09186