Chemical elements
  Cobalt
    Isotopes
    Energy
    Production
    Preparation
    Application
    Physical Properties
    Chemical Properties
    Compounds
    PDB 1a0c-1epy
    PDB 1et4-1k7y
    PDB 1k98-1r6x
    PDB 1r8k-1v9b
    PDB 1vl3-212d
    PDB 222d-2eff
    PDB 2ehd-2j3z
    PDB 2j4j-2r1p
    PDB 2r2s-331d
    PDB 362d-3fqw
    PDB 3ft6-3igy
    PDB 3igz-3o0n
    PDB 3o0o-4req
    PDB 4xim-9icb
      4xim
      5cel
      5req
      6cel
      6req
      7cel
      7req
      9icb

Cobalt in the structure of Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor Complex (pdb 6req)






The binding sites of Cobalt atom in the structure of Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor Complex (pdb code 6req). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom.
The 6req structure was solved by P.R.EVANS, F.MANCIA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)20.0-2.2
Space groupP1211
a (A)119.950
b (A)160.460
c (A)88.480
alpha (°)90.00
beta (°)105.01
gamma (°)90.00
Rfactor (%)20.6
Rfree (%)26.3


Cobalt Binding Sites:

Cobalt binding site 1 out of 2 in 6req


Cobalt binding site 1 out of 2 in 6req
Click to enlarge
stereopicture of Cobalt binding site 1 out of 2 in 6req
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 6req. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His610, A: B121800, A: Hoh3276, A: Hoh3357,

conact list:


AtomAtomDistance (A)
CoNE2 A:His6102.48
CoND1 A:His6104.61
CoCD2 A:His6103.26
CoCE1 A:His6103.56
CoCG A:His6104.49
CoC18 A:B1218004.17
CoC11 A:B1218002.79
CoC1 A:B1218002.81
CoC8 A:B1218004.22
CoC2 A:B1218004.03
CoC46 A:B1218004.72
CoN22 A:B1218001.88
CoC35 A:B1218004.70
CoC17 A:B1218004.23
CoN21 A:B1218001.67
CoC12 A:B1218004.11
CoC19 A:B1218002.93
CoCO A:B1218000.00
CoC15 A:B1218003.45
CoC16 A:B1218002.95
CoC6 A:B1218002.84
CoC5 A:B1218003.13
CoC4 A:B1218002.70
CoC10 A:B1218003.25
CoC13 A:B1218004.18
CoC20 A:B1218003.48
CoC48 A:B1218004.74
CoC42 A:B1218004.55
CoC9 A:B1218002.92
CoC54 A:B1218004.63
CoC14 A:B1218002.94
CoN24 A:B1218001.97
CoN23 A:B1218001.82
CoC7 A:B1218004.22
CoC53 A:B1218004.97
CoC3 A:B1218004.03
CoC26 A:B1218004.37
CoO A:Hoh32764.42
CoO A:Hoh33574.34

interactive model:


Cobalt binding site 2 out of 2 in 6req


Cobalt binding site 2 out of 2 in 6req
Click to enlarge
stereopicture of Cobalt binding site 2 out of 2 in 6req
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cobalt in the PDB 6req. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: His610, C: B122800, C: Hoh3279, C: Hoh3362, C: Hoh3363,

conact list:


AtomAtomDistance (A)
CoNE2 C:His6102.46
CoND1 C:His6104.57
CoCD2 C:His6103.24
CoCE1 C:His6103.54
CoCG C:His6104.47
CoC18 C:B1228004.10
CoC11 C:B1228002.83
CoC1 C:B1228002.80
CoC8 C:B1228004.26
CoC2 C:B1228004.08
CoC46 C:B1228004.84
CoN22 C:B1228001.96
CoC35 C:B1228004.85
CoC17 C:B1228004.19
CoN21 C:B1228001.82
CoC12 C:B1228004.16
CoC19 C:B1228002.82
CoCO C:B1228000.00
CoC15 C:B1228003.42
CoC16 C:B1228002.92
CoC6 C:B1228002.99
CoC5 C:B1228003.32
CoC4 C:B1228002.88
CoC10 C:B1228003.21
CoC13 C:B1228004.17
CoC20 C:B1228003.46
CoC48 C:B1228004.73
CoC42 C:B1228004.50
CoC9 C:B1228002.91
CoC54 C:B1228004.74
CoC14 C:B1228002.93
CoN24 C:B1228001.90
CoN23 C:B1228001.85
CoC7 C:B1228004.30
CoC53 C:B1228004.93
CoC3 C:B1228004.15
CoC26 C:B1228004.43
CoO C:Hoh32794.25
CoO C:Hoh33624.88
CoO C:Hoh33634.41

interactive model:




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