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Cobalt in PDB 6tb6: Crystal Structure of Formate Dehydrogenase FDH2 D222S/Q223R Enzyme From Granulicella Mallensis MP5ACTX8 in Complex with Nadp and Azide.

Enzymatic activity of Crystal Structure of Formate Dehydrogenase FDH2 D222S/Q223R Enzyme From Granulicella Mallensis MP5ACTX8 in Complex with Nadp and Azide.

All present enzymatic activity of Crystal Structure of Formate Dehydrogenase FDH2 D222S/Q223R Enzyme From Granulicella Mallensis MP5ACTX8 in Complex with Nadp and Azide.:
1.17.1.9;

Protein crystallography data

The structure of Crystal Structure of Formate Dehydrogenase FDH2 D222S/Q223R Enzyme From Granulicella Mallensis MP5ACTX8 in Complex with Nadp and Azide., PDB code: 6tb6 was solved by M.S.Robescu, R.Rubini, F.Filippini, B.Bergantino, L.Cendron, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.59 / 1.98
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.903, 60.783, 131.682, 90.00, 90.00, 90.00
R / Rfree (%) 15.4 / 20.6

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Formate Dehydrogenase FDH2 D222S/Q223R Enzyme From Granulicella Mallensis MP5ACTX8 in Complex with Nadp and Azide. (pdb code 6tb6). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of Formate Dehydrogenase FDH2 D222S/Q223R Enzyme From Granulicella Mallensis MP5ACTX8 in Complex with Nadp and Azide., PDB code: 6tb6:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 6tb6

Go back to Cobalt Binding Sites List in 6tb6
Cobalt binding site 1 out of 2 in the Crystal Structure of Formate Dehydrogenase FDH2 D222S/Q223R Enzyme From Granulicella Mallensis MP5ACTX8 in Complex with Nadp and Azide.


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Formate Dehydrogenase FDH2 D222S/Q223R Enzyme From Granulicella Mallensis MP5ACTX8 in Complex with Nadp and Azide. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co703

b:31.5
occ:1.00
 UNK B:UNX707 2.0 30.0 1.0
UNK B:UNX708 2.1 30.0 1.0
NE2 B:HIS224 2.1 30.4 1.0
UNK B:UNX705 2.1 30.0 1.0
O B:HOH1094 2.2 39.2 1.0
UNK B:UNX706 2.5 30.0 1.0
UNK B:UNX709 2.7 30.0 1.0
CD2 B:HIS224 3.0 27.3 1.0
CE1 B:HIS224 3.1 30.9 1.0
O1X B:NAP702 3.9 43.0 1.0
CG B:HIS224 4.2 26.3 1.0
ND1 B:HIS224 4.2 33.6 1.0
P2B B:NAP702 4.9 43.4 1.0
O3X B:NAP702 4.9 28.3 1.0

Cobalt binding site 2 out of 2 in 6tb6

Go back to Cobalt Binding Sites List in 6tb6
Cobalt binding site 2 out of 2 in the Crystal Structure of Formate Dehydrogenase FDH2 D222S/Q223R Enzyme From Granulicella Mallensis MP5ACTX8 in Complex with Nadp and Azide.


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Formate Dehydrogenase FDH2 D222S/Q223R Enzyme From Granulicella Mallensis MP5ACTX8 in Complex with Nadp and Azide. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co704

b:42.5
occ:1.00
 O B:HOH964 2.2 37.6 1.0
NE2 B:HIS259 2.5 26.2 0.5
CE1 B:HIS259 3.3 24.9 0.5
CD2 B:HIS259 3.5 26.6 0.5
O2X B:NAP702 4.0 53.7 1.0
ND1 B:HIS259 4.3 26.4 0.5
CG B:HIS259 4.5 25.4 0.5
CD2 B:HIS259 4.7 24.5 0.5
CG B:PRO257 4.7 23.7 1.0

Reference:

M.S.Robescu, R.Rubini, E.Beneventi, M.Tavanti, C.Lonigro, F.Zito, F.Filippini, L.Cendron, E.Bergantino. From the Amelioration of A Nadp+-Dependent Formate Dehydrogenase to the Discovery of A New Enzyme: Round Trip From Theory to Practice Chemcatchem 2020.
ISSN: ESSN 1867-3899
DOI: 10.1002/CCTC.201902089
Page generated: Tue Jul 30 18:59:28 2024

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