Cobalt in PDB 6vyh: Cryo-Em Structure of SLC40/Ferroportin in Complex with Fab

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Cryo-Em Structure of SLC40/Ferroportin in Complex with Fab (pdb code 6vyh). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Cryo-Em Structure of SLC40/Ferroportin in Complex with Fab, PDB code: 6vyh:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 6vyh

Go back to Cobalt Binding Sites List in 6vyh
Cobalt binding site 1 out of 2 in the Cryo-Em Structure of SLC40/Ferroportin in Complex with Fab


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Cryo-Em Structure of SLC40/Ferroportin in Complex with Fab within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co601

b:68.8
occ:1.00
OD2 A:ASP39 1.9 41.0 1.0
OD1 A:ASP39 2.1 41.0 1.0
CG A:ASP39 2.3 41.0 1.0
NE2 A:HIS43 2.4 43.1 1.0
CD2 A:HIS43 2.9 43.1 1.0
CE1 A:HIS43 3.6 43.1 1.0
CB A:ASP39 3.8 41.0 1.0
CG A:HIS43 4.2 43.1 1.0
OG A:SER147 4.5 21.2 1.0
ND1 A:HIS43 4.5 43.1 1.0
O A:ASP39 4.6 41.0 1.0
CA A:ASP39 4.7 41.0 1.0
C A:ASP39 4.8 41.0 1.0
NH2 A:ARG40 4.9 39.5 1.0

Cobalt binding site 2 out of 2 in 6vyh

Go back to Cobalt Binding Sites List in 6vyh
Cobalt binding site 2 out of 2 in the Cryo-Em Structure of SLC40/Ferroportin in Complex with Fab


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Cryo-Em Structure of SLC40/Ferroportin in Complex with Fab within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co602

b:96.8
occ:1.00
SG A:CYS326 2.1 77.5 1.0
CB A:CYS326 2.7 77.5 1.0
NE2 A:HIS508 2.9 46.6 1.0
CE1 A:HIS508 3.3 46.6 1.0
CA A:CYS326 3.8 77.5 1.0
CG1 A:VAL512 4.1 56.5 1.0
CD2 A:HIS508 4.1 46.6 1.0
O A:CYS326 4.5 77.5 1.0
C A:CYS326 4.5 77.5 1.0
ND1 A:HIS508 4.5 46.6 1.0
CE1 A:PHE509 4.6 47.2 1.0
CG2 A:VAL321 4.7 53.2 1.0
OG1 A:THR329 4.8 87.7 1.0
CB A:VAL512 4.9 56.5 1.0
CG2 A:VAL512 4.9 56.5 1.0
CD1 A:PHE509 4.9 47.2 1.0
N A:CYS326 4.9 77.5 1.0
CG A:HIS508 4.9 46.6 1.0

Reference:

Y.Pan, Z.Ren, S.Gao, J.Shen, L.Wang, Z.Xu, Y.Yu, P.Bachina, H.Zhang, X.Fan, A.Laganowsky, N.Yan, M.Zhou. Structural Basis of Ion Transport and Inhibition in Ferroportin. Nat Commun V. 11 5686 2020.
ISSN: ESSN 2041-1723
PubMed: 33173040
DOI: 10.1038/S41467-020-19458-6
Page generated: Sun Dec 13 10:53:42 2020

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