Cobalt in PDB 6wfh: Streptomyces Coelicolor Methylmalonyl-Coa Epimerase Substrate Complex

Protein crystallography data

The structure of Streptomyces Coelicolor Methylmalonyl-Coa Epimerase Substrate Complex, PDB code: 6wfh was solved by L.M.Stunkard, A.B.Benjamin, J.B.Bower, T.J.Huth, J.R.Lohman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.31 / 1.84
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 68.302, 68.302, 103.462, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 18.6

Other elements in 6wfh:

The structure of Streptomyces Coelicolor Methylmalonyl-Coa Epimerase Substrate Complex also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Streptomyces Coelicolor Methylmalonyl-Coa Epimerase Substrate Complex (pdb code 6wfh). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Streptomyces Coelicolor Methylmalonyl-Coa Epimerase Substrate Complex, PDB code: 6wfh:

Cobalt binding site 1 out of 1 in 6wfh

Go back to Cobalt Binding Sites List in 6wfh
Cobalt binding site 1 out of 1 in the Streptomyces Coelicolor Methylmalonyl-Coa Epimerase Substrate Complex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Streptomyces Coelicolor Methylmalonyl-Coa Epimerase Substrate Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co201

b:31.3
occ:1.00
OE2 A:GLU134 2.1 30.2 1.0
NE2 A:HIS84 2.1 26.9 1.0
OS1 A:V0V202 2.1 35.3 1.0
NE2 A:HIS7 2.1 27.8 1.0
OE1 A:GLN60 2.2 32.2 1.0
OS5 A:V0V202 2.2 34.3 1.0
CE1 A:HIS84 2.9 32.4 1.0
CE1 A:HIS7 3.0 29.2 1.0
CS4 A:V0V202 3.1 45.0 1.0
CD A:GLU134 3.1 32.4 1.0
CD2 A:HIS7 3.1 29.2 1.0
CS1 A:V0V202 3.1 50.8 1.0
CD A:GLN60 3.1 34.1 1.0
CD2 A:HIS84 3.2 29.6 1.0
OE1 A:GLU134 3.3 37.5 1.0
NE2 A:GLN60 3.4 37.5 1.0
CS2 A:V0V202 3.4 49.2 1.0
ND1 A:HIS84 4.1 31.1 1.0
ND1 A:HIS7 4.2 27.8 1.0
CG A:HIS7 4.2 26.1 1.0
CG A:HIS84 4.2 29.0 1.0
OS4 A:V0V202 4.2 48.4 1.0
CG A:GLN60 4.4 34.5 1.0
CG A:GLU134 4.5 32.2 1.0
S A:V0V202 4.7 47.5 1.0
CZ A:PHE122 4.8 33.6 1.0
CB A:ALA86 4.8 33.6 1.0
CB A:GLU134 4.8 28.9 1.0
CP1 A:V0V202 4.8 43.2 1.0
CE1 A:PHE122 4.9 37.0 1.0
CB A:GLN60 4.9 28.6 1.0
CS3 A:V0V202 5.0 57.3 1.0
O A:HOH370 5.0 38.4 1.0

Reference:

L.M.Stunkard, A.B.Benjamin, J.B.Bower, T.J.Huth, J.R.Lohman. Methylmalonyl-Coa Epimerase in Complex with (2R/S)Methylmalonyl-Coa To Be Published.
Page generated: Sun Dec 13 10:53:52 2020

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