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Cobalt in PDB 6wt0: Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J25 Immobile Holliday Junction

Protein crystallography data

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J25 Immobile Holliday Junction, PDB code: 6wt0 was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.47 / 3.11
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 68.948, 68.948, 59.418, 90, 90, 120
R / Rfree (%) 24.7 / 26.2

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J25 Immobile Holliday Junction (pdb code 6wt0). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J25 Immobile Holliday Junction, PDB code: 6wt0:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 6wt0

Go back to Cobalt Binding Sites List in 6wt0
Cobalt binding site 1 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J25 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J25 Immobile Holliday Junction within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co101

b:86.0
occ:1.00
N7 B:DG2 3.5 74.1 1.0
OP2 B:DG1 3.6 90.1 1.0
O6 B:DG2 3.7 85.2 1.0
C5 B:DG2 4.3 75.5 1.0
C6 B:DG2 4.4 82.5 1.0
P B:DG1 4.5 99.6 1.0
N7 B:DG1 4.6 72.8 1.0
C8 B:DG2 4.6 79.8 1.0

Cobalt binding site 2 out of 2 in 6wt0

Go back to Cobalt Binding Sites List in 6wt0
Cobalt binding site 2 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J25 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J25 Immobile Holliday Junction within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Co101

b:147.2
occ:1.00
N7 D:DG11 4.1 103.7 1.0
O6 D:DG11 4.2 110.0 1.0
O4 D:DT12 4.6 121.5 1.0
C5 D:DG11 4.9 105.7 1.0
C6 D:DG11 4.9 110.5 1.0

Reference:

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.
Page generated: Sat Aug 21 13:28:33 2021

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