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Cobalt in PDB 6xgl: Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J36 Immobile Holliday Junction

Protein crystallography data

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J36 Immobile Holliday Junction, PDB code: 6xgl was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.41 / 3.17
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 68.816, 68.816, 60.564, 90, 90, 120
R / Rfree (%) 22.7 / 27.3

Other elements in 6xgl:

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J36 Immobile Holliday Junction also contains other interesting chemical elements:

Arsenic (As) 2 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J36 Immobile Holliday Junction (pdb code 6xgl). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J36 Immobile Holliday Junction, PDB code: 6xgl:

Cobalt binding site 1 out of 1 in 6xgl

Go back to Cobalt Binding Sites List in 6xgl
Cobalt binding site 1 out of 1 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J36 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J36 Immobile Holliday Junction within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Co102

b:141.6
occ:1.00
O6 D:DG9 4.2 70.3 1.0
OP2 C:DA2 4.5 94.4 1.0
N7 D:DG8 4.6 78.4 1.0
N7 D:DG9 4.7 78.8 1.0
C8 D:DG8 4.9 80.1 1.0

Reference:

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.
Page generated: Sat Aug 21 13:28:33 2021

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