Cobalt in PDB 6xgm: Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J25 Immobile Holliday Junction

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J25 Immobile Holliday Junction, PDB code: 6xgm was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 3.11
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	69.023, 69.023, 59.453, 90, 90, 120
R / Rfree (%)	21.9 / 23.5

The binding sites of Cobalt atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J25 Immobile Holliday Junction (pdb code 6xgm). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J25 Immobile Holliday Junction, PDB code: 6xgm:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J25 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J25 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ C:Co101 b:68.8 occ:1.00 O6 C:DG4 3.0 76.3 1.0 OP2 C:DG3 3.8 105.8 1.0 C6 C:DG4 4.1 79.4 1.0 N7 C:DG4 4.2 90.1 1.0 C5 C:DG4 4.5 65.1 1.0 N7 C:DG3 4.6 56.6 1.0

Cobalt binding site 2 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J25 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J25 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ D:Co101 b:141.2 occ:1.00 O6 D:DG11 3.0 80.3 1.0 C6 D:DG11 4.1 87.5 1.0 N7 D:DG11 4.8 112.8 1.0 C5 D:DG11 4.8 102.4 1.0 N6 A:DA7 4.8 179.0 1.0

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.