Atomistry » Cobalt » PDB 6vyh-7cel » 6xm6
Atomistry »
  Cobalt »
    PDB 6vyh-7cel »
      6xm6 »

Cobalt in PDB 6xm6: Crystal Structure of Cobalt-Bound LSD4 From Sphingobium Sp. Strain Syk-6

Protein crystallography data

The structure of Crystal Structure of Cobalt-Bound LSD4 From Sphingobium Sp. Strain Syk-6, PDB code: 6xm6 was solved by E.Kuatsjah, A.C.Chan, R.Katahira, G.T.Beckham, M.E.Murphy, L.D.Eltis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.85 / 1.45
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 85.48, 112.18, 114.74, 90, 90, 90
R / Rfree (%) 13.9 / 15.9

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Cobalt-Bound LSD4 From Sphingobium Sp. Strain Syk-6 (pdb code 6xm6). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Cobalt-Bound LSD4 From Sphingobium Sp. Strain Syk-6, PDB code: 6xm6:

Cobalt binding site 1 out of 1 in 6xm6

Go back to Cobalt Binding Sites List in 6xm6
Cobalt binding site 1 out of 1 in the Crystal Structure of Cobalt-Bound LSD4 From Sphingobium Sp. Strain Syk-6


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Cobalt-Bound LSD4 From Sphingobium Sp. Strain Syk-6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co501

b:12.2
occ:1.00
NE2 A:HIS218 2.0 10.0 1.0
NE2 A:HIS476 2.0 9.7 1.0
NE2 A:HIS284 2.0 12.3 1.0
NE2 A:HIS167 2.1 11.3 1.0
O A:HOH959 2.2 16.5 1.0
CE1 A:HIS476 3.0 11.8 1.0
CE1 A:HIS218 3.0 9.7 1.0
CD2 A:HIS284 3.0 13.0 1.0
CE1 A:HIS167 3.0 11.4 1.0
CD2 A:HIS218 3.0 10.5 1.0
CD2 A:HIS476 3.0 11.4 1.0
CE1 A:HIS284 3.1 11.5 1.0
HE1 A:HIS167 3.1 13.6 1.0
HD2 A:HIS284 3.1 15.6 1.0
HE1 A:HIS218 3.1 11.7 1.0
HE1 A:HIS476 3.2 14.1 1.0
CD2 A:HIS167 3.2 11.2 1.0
HD2 A:HIS218 3.2 12.6 1.0
HE1 A:HIS284 3.3 13.8 1.0
HD2 A:HIS476 3.3 13.7 1.0
HD2 A:HIS167 3.4 13.5 1.0
ND1 A:HIS476 4.0 10.9 1.0
ND1 A:HIS218 4.1 11.9 1.0
CG A:HIS476 4.1 12.4 1.0
CG A:HIS218 4.1 11.3 1.0
O A:HOH1172 4.1 28.5 1.0
CG A:HIS284 4.2 12.7 1.0
ND1 A:HIS284 4.2 13.0 1.0
ND1 A:HIS167 4.2 10.2 1.0
HG23 A:THR121 4.3 13.3 1.0
CG A:HIS167 4.3 9.6 1.0
HG22 A:THR121 4.4 13.3 1.0
O A:HOH1273 4.5 32.0 1.0
HD22 A:LEU475 4.6 16.4 1.0
HG21 A:THR121 4.6 13.3 1.0
CG2 A:THR121 4.6 11.1 1.0
HB2 A:ASP219 4.7 13.6 1.0
HD1 A:HIS476 4.8 13.1 1.0
HD1 A:HIS218 4.9 14.3 1.0
HE1 A:PHE354 4.9 25.4 1.0
HD1 A:HIS167 4.9 12.2 1.0
HD1 A:HIS284 5.0 15.6 1.0

Reference:

E.Kuatsjah, A.C.K.Chan, R.Katahira, S.J.Haugen, G.T.Beckham, M.E.Murphy, L.D.Eltis. Structural and Functional Analysis of Lignostilbene Dioxygenases From Sphingobium Sp. Syk-6 J.Biol.Chem. 2021.
ISSN: ESSN 1083-351X
Page generated: Sat Jul 10 13:30:20 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy