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Cobalt in PDB 6zek: Crystal Structure of Mouse Csad

Enzymatic activity of Crystal Structure of Mouse Csad

All present enzymatic activity of Crystal Structure of Mouse Csad:
4.1.1.11; 4.1.1.29;

Protein crystallography data

The structure of Crystal Structure of Mouse Csad, PDB code: 6zek was solved by E.Mahootchi, A.Raasakka, J.Haavik, P.Kursula, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.89 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 72.94, 113.26, 113.37, 90, 95.81, 90
R / Rfree (%) 17.9 / 23.5

Other elements in 6zek:

The structure of Crystal Structure of Mouse Csad also contains other interesting chemical elements:

Chlorine (Cl) 13 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Mouse Csad (pdb code 6zek). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 4 binding sites of Cobalt where determined in the Crystal Structure of Mouse Csad, PDB code: 6zek:
Jump to Cobalt binding site number: 1; 2; 3; 4;

Cobalt binding site 1 out of 4 in 6zek

Go back to Cobalt Binding Sites List in 6zek
Cobalt binding site 1 out of 4 in the Crystal Structure of Mouse Csad


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Mouse Csad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co502

b:48.6
occ:1.00
O A:ARG398 2.4 30.5 1.0
O A:PHE401 2.6 32.5 1.0
O A:ILE395 2.7 30.9 1.0
O A:HOH767 3.0 43.9 1.0
HA A:LYS396 3.1 42.1 1.0
O A:LYS396 3.2 37.6 1.0
H A:PHE401 3.5 37.7 1.0
C A:ARG398 3.5 36.4 1.0
C A:LYS396 3.6 31.9 1.0
H A:ARG398 3.6 43.8 1.0
HB2 A:PHE401 3.7 37.8 1.0
C A:PHE401 3.7 33.2 1.0
CA A:LYS396 3.8 35.1 1.0
C A:ILE395 3.8 34.9 1.0
N A:ARG398 4.0 36.5 1.0
HA A:GLU399 4.0 42.7 1.0
N A:PHE401 4.2 31.4 1.0
N A:LYS396 4.3 31.2 1.0
CA A:PHE401 4.3 29.7 1.0
CA A:ARG398 4.4 33.7 1.0
HA A:GLU402 4.4 36.0 1.0
CB A:PHE401 4.4 31.5 1.0
N A:GLU399 4.5 34.8 1.0
HG23 A:ILE395 4.5 34.6 1.0
N A:LYS397 4.5 33.2 1.0
H A:GLY400 4.6 47.9 1.0
CA A:GLU399 4.6 35.6 1.0
C A:LYS397 4.7 38.4 1.0
HB2 A:ARG398 4.7 41.4 1.0
HG22 A:ILE395 4.8 34.6 1.0
N A:GLU402 4.8 26.1 1.0
N A:GLY400 4.8 39.9 1.0
HB3 A:PHE401 4.9 37.8 1.0
O A:HOH741 4.9 28.3 1.0
C A:GLU399 4.9 42.1 1.0
HD2 A:PHE401 5.0 40.6 1.0

Cobalt binding site 2 out of 4 in 6zek

Go back to Cobalt Binding Sites List in 6zek
Cobalt binding site 2 out of 4 in the Crystal Structure of Mouse Csad


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of Mouse Csad within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Co502

b:39.6
occ:0.64
O B:ARG398 2.4 30.1 1.0
O B:ILE395 2.6 28.1 1.0
O B:PHE401 2.7 45.0 1.0
O B:LYS396 2.8 43.1 1.0
HA B:LYS396 3.0 43.3 1.0
O B:HOH699 3.0 42.5 1.0
C B:LYS396 3.3 31.2 1.0
C B:ARG398 3.6 39.4 1.0
CA B:LYS396 3.6 36.1 1.0
C B:ILE395 3.7 32.6 1.0
H B:ARG398 3.8 35.2 1.0
HB2 B:PHE401 3.9 45.2 1.0
H B:PHE401 3.9 50.7 1.0
C B:PHE401 3.9 40.2 1.0
N B:ARG398 4.0 29.3 1.0
HA B:GLU399 4.0 53.5 1.0
N B:LYS396 4.1 34.3 1.0
O B:HOH692 4.3 31.4 1.0
N B:LYS397 4.3 30.0 1.0
HA B:GLU402 4.3 47.9 1.0
CA B:ARG398 4.4 34.3 1.0
HG23 B:ILE395 4.5 40.6 1.0
C B:LYS397 4.5 32.9 1.0
N B:GLU399 4.5 37.6 1.0
N B:PHE401 4.5 42.2 1.0
CA B:PHE401 4.6 43.0 1.0
CB B:PHE401 4.6 37.6 1.0
CA B:GLU399 4.7 44.6 1.0
HG22 B:ILE395 4.7 40.6 1.0
HB2 B:ARG398 4.8 46.8 1.0
H B:LYS397 4.9 36.0 1.0
CA B:LYS397 4.9 32.1 1.0
N B:GLU402 4.9 39.5 1.0
HB3 B:PHE401 4.9 45.2 1.0
CB B:LYS396 4.9 29.4 1.0
HA B:ILE395 5.0 35.4 1.0
HA B:LYS397 5.0 38.5 1.0
CA B:ILE395 5.0 29.5 1.0

Cobalt binding site 3 out of 4 in 6zek

Go back to Cobalt Binding Sites List in 6zek
Cobalt binding site 3 out of 4 in the Crystal Structure of Mouse Csad


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Crystal Structure of Mouse Csad within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Co503

b:30.8
occ:0.60
O C:ARG398 2.4 31.7 1.0
O C:HOH766 2.6 39.4 1.0
O C:ILE395 2.7 33.6 1.0
O C:PHE401 2.7 27.4 1.0
HA C:LYS396 3.2 40.5 1.0
O C:LYS396 3.4 35.9 1.0
C C:ARG398 3.5 29.2 1.0
H C:PHE401 3.7 28.8 1.0
C C:LYS396 3.7 33.1 1.0
H C:ARG398 3.7 40.7 1.0
HB2 C:PHE401 3.8 34.7 1.0
C C:ILE395 3.8 31.7 1.0
C C:PHE401 3.8 29.7 1.0
CA C:LYS396 3.8 33.8 1.0
HA C:GLU399 4.0 46.1 1.0
N C:ARG398 4.0 33.9 1.0
N C:PHE401 4.3 24.0 1.0
N C:LYS396 4.3 29.1 1.0
CA C:ARG398 4.4 34.7 1.0
N C:LYS397 4.4 30.0 1.0
CA C:PHE401 4.4 27.4 1.0
N C:GLU399 4.4 35.9 1.0
HG23 C:ILE395 4.5 32.8 1.0
CB C:PHE401 4.5 28.9 1.0
HA C:GLU402 4.5 41.1 1.0
CA C:GLU399 4.6 38.4 1.0
C C:LYS397 4.6 33.2 1.0
HB2 C:ARG398 4.7 40.6 1.0
H C:GLY400 4.7 41.4 1.0
O C:HOH748 4.8 31.3 1.0
H C:LYS397 4.8 36.0 1.0
HG22 C:ILE395 4.9 32.8 1.0
HB3 C:PHE401 4.9 34.7 1.0
N C:GLU402 4.9 28.9 1.0
C C:GLU399 4.9 40.0 1.0
N C:GLY400 4.9 34.5 1.0
CA C:LYS397 5.0 34.5 1.0
HA C:ILE395 5.0 31.4 1.0

Cobalt binding site 4 out of 4 in 6zek

Go back to Cobalt Binding Sites List in 6zek
Cobalt binding site 4 out of 4 in the Crystal Structure of Mouse Csad


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Crystal Structure of Mouse Csad within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Co502

b:41.6
occ:0.73
O D:ARG398 2.4 35.0 1.0
O D:PHE401 2.6 39.4 1.0
O D:ILE395 2.7 30.9 1.0
O D:HOH723 2.9 33.9 1.0
O D:HOH630 3.1 43.2 1.0
HA D:LYS396 3.2 48.3 1.0
O D:LYS396 3.3 39.5 1.0
C D:ARG398 3.5 37.9 1.0
C D:LYS396 3.6 37.5 1.0
H D:PHE401 3.7 46.1 1.0
HB2 D:PHE401 3.7 44.5 1.0
C D:PHE401 3.7 41.5 1.0
HA D:GLU399 3.8 53.6 1.0
CA D:LYS396 3.8 40.2 1.0
C D:ILE395 3.8 33.1 1.0
H D:ARG398 3.9 42.4 1.0
N D:ARG398 4.1 35.4 1.0
O D:HOH718 4.2 31.0 1.0
N D:PHE401 4.3 38.4 1.0
N D:LYS396 4.3 28.5 1.0
N D:LYS397 4.3 33.7 1.0
CA D:ARG398 4.4 33.9 1.0
N D:GLU399 4.4 38.5 1.0
CA D:PHE401 4.4 37.1 1.0
HA D:GLU402 4.4 38.0 1.0
CA D:GLU399 4.5 44.7 1.0
CB D:PHE401 4.5 37.1 1.0
HG23 D:ILE395 4.5 32.1 1.0
C D:LYS397 4.6 42.2 1.0
HB2 D:ARG398 4.7 48.1 1.0
H D:GLY400 4.8 55.5 1.0
N D:GLU402 4.8 33.2 1.0
H D:LYS397 4.8 40.4 1.0
HG22 D:ILE395 4.8 32.1 1.0
HB3 D:PHE401 4.8 44.5 1.0
CA D:LYS397 4.9 38.0 1.0
C D:GLU399 5.0 40.0 1.0
N D:GLY400 5.0 46.3 1.0

Reference:

E.Mahootchi, A.Raasakka, W.Luan, G.Muruganandam, R.Loris, J.Haavik, P.Kursula. Structure and Substrate Specificity Determinants of the Taurine Biosynthetic Enzyme Cysteine Sulphinic Acid Decarboxylase. J.Struct.Biol. V. 213 07674 2021.
ISSN: ESSN 1095-8657
PubMed: 33253877
DOI: 10.1016/J.JSB.2020.107674
Page generated: Sat Jul 10 13:30:21 2021

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