Cobalt in PDB 7eeo: Bulged-G Motif Composed of Rna, Dna and 2'-O-Methyl Rna

The structure of Bulged-G Motif Composed of Rna, Dna and 2'-O-Methyl Rna, PDB code: 7eeo was solved by J.Kondo, S.Sekiguchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.11 / 2.70
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	24.776, 116.432, 27.904, 90, 107.22, 90
R / Rfree (%)	20.7 / 26.5

The binding sites of Cobalt atom in the Bulged-G Motif Composed of Rna, Dna and 2'-O-Methyl Rna (pdb code 7eeo). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 3 binding sites of Cobalt where determined in the Bulged-G Motif Composed of Rna, Dna and 2'-O-Methyl Rna, PDB code: 7eeo:
Jump to Cobalt binding site number: 1; 2; 3;

Cobalt binding site 1 out of 3 in the Bulged-G Motif Composed of Rna, Dna and 2'-O-Methyl Rna


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Bulged-G Motif Composed of Rna, Dna and 2'-O-Methyl Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:Co101 b:84.7 occ:1.00 CO A:NCO101 0.0 84.7 1.0 N2 A:NCO101 2.0 62.0 1.0 N6 A:NCO101 2.0 64.6 1.0 N3 A:NCO101 2.0 66.1 1.0 N5 A:NCO101 2.0 61.3 1.0 N4 A:NCO101 2.0 55.5 1.0 N1 A:NCO101 2.0 56.1 1.0 OP1 A:G22 3.9 48.1 1.0 OP2 A:G23 5.0 41.0 1.0

Cobalt binding site 2 out of 3 in the Bulged-G Motif Composed of Rna, Dna and 2'-O-Methyl Rna


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Bulged-G Motif Composed of Rna, Dna and 2'-O-Methyl Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:Co102 b:65.7 occ:1.00 CO A:NCO102 0.0 65.7 1.0 N1 A:NCO102 2.0 43.5 1.0 N2 A:NCO102 2.0 48.6 1.0 N4 A:NCO102 2.0 43.1 1.0 N6 A:NCO102 2.0 49.6 1.0 N5 A:NCO102 2.0 52.6 1.0 N3 A:NCO102 2.0 58.0 1.0 N7 A:G13 4.1 31.8 1.0 OP1 A:G15 4.4 46.7 1.0 C8 A:G13 4.8 35.2 1.0 O6 A:G13 4.8 40.0 1.0 OP2 A:OMC12 4.8 44.5 1.0 OP2 A:G13 4.9 46.8 1.0 C5 A:G13 4.9 31.1 1.0 OP2 A:G15 5.0 42.1 1.0

Cobalt binding site 3 out of 3 in the Bulged-G Motif Composed of Rna, Dna and 2'-O-Methyl Rna


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Bulged-G Motif Composed of Rna, Dna and 2'-O-Methyl Rna within 5.0Å range: probe atom residue distance (Å) B Occ B:Co101 b:102.9 occ:1.00 CO B:NCO101 0.0 102.9 1.0 N5 B:NCO101 2.0 64.1 1.0 N3 B:NCO101 2.0 59.7 1.0 N2 B:NCO101 2.0 73.7 1.0 N4 B:NCO101 2.0 53.4 1.0 N6 B:NCO101 2.0 75.5 1.0 N1 B:NCO101 2.0 62.1 1.0 O6 B:G13 4.3 50.0 1.0 N7 B:G13 4.6 42.0 1.0

J.Kondo, S.Sekiguchi. Bulged-G Motif Composed of Rna, Dna and 2'-O-Methyl Rna To Be Published.