Cobalt in PDB 7ei7: Rna Kink-Turn Motif with 2-Aminopurine

The structure of Rna Kink-Turn Motif with 2-Aminopurine, PDB code: 7ei7 was solved by J.Kondo, S.Saisu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.97 / 3.20
Space group	P 42 21 2
Cell size a, b, c (Å), α, β, γ (°)	75.934, 75.934, 41.184, 90, 90, 90
R / Rfree (%)	24.5 / 30.5

The binding sites of Cobalt atom in the Rna Kink-Turn Motif with 2-Aminopurine (pdb code 7ei7). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 6 binding sites of Cobalt where determined in the Rna Kink-Turn Motif with 2-Aminopurine, PDB code: 7ei7:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5; 6;

Cobalt binding site 1 out of 6 in the Rna Kink-Turn Motif with 2-Aminopurine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Rna Kink-Turn Motif with 2-Aminopurine within 5.0Å range: probe atom residue distance (Å) B Occ A:Co101 b:62.7 occ:1.00 O6 A:G14 2.3 62.6 1.0 C6 A:G14 3.4 65.8 1.0 N1 A:G14 4.3 66.0 1.0 OP2 A:G12 4.3 96.8 1.0 OP2 A:G13 4.3 82.9 1.0 O2' B:G7 4.3 69.4 1.0 C5 A:G14 4.5 67.5 1.0 O6 A:G15 4.5 56.9 1.0 N7 A:G14 4.7 71.6 1.0 N7 A:G13 4.8 74.4 1.0 C2' B:G7 4.9 63.9 1.0

Cobalt binding site 2 out of 6 in the Rna Kink-Turn Motif with 2-Aminopurine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Rna Kink-Turn Motif with 2-Aminopurine within 5.0Å range: probe atom residue distance (Å) B Occ A:Co102 b:99.1 occ:1.00 O6 A:G1 2.4 63.3 1.0 N7 A:G1 2.9 55.3 1.0 C6 A:G1 3.1 57.0 1.0 C5 A:G1 3.3 48.9 1.0 C8 A:G1 4.1 48.0 1.0 N1 A:G1 4.4 54.0 1.0 C4 A:G1 4.6 43.7 1.0 N4 B:C19 5.0 45.9 1.0 N9 A:G1 5.0 43.9 1.0

Cobalt binding site 3 out of 6 in the Rna Kink-Turn Motif with 2-Aminopurine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Rna Kink-Turn Motif with 2-Aminopurine within 5.0Å range: probe atom residue distance (Å) B Occ A:Co103 b:116.3 occ:1.00 OP2 A:G17 4.4 75.0 1.0 C8 A:G17 4.4 63.3 1.0 N7 A:G17 4.5 50.8 1.0

Cobalt binding site 4 out of 6 in the Rna Kink-Turn Motif with 2-Aminopurine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Rna Kink-Turn Motif with 2-Aminopurine within 5.0Å range: probe atom residue distance (Å) B Occ A:Co104 b:54.9 occ:1.00 N7 A:2PR6 2.5 53.2 1.0 C8 A:2PR6 3.0 50.9 1.0 C5 A:2PR6 3.7 52.4 1.0 N9 A:2PR6 4.3 45.3 1.0 C6 A:2PR6 4.5 53.6 1.0 C4 A:2PR6 4.7 44.5 1.0

Cobalt binding site 5 out of 6 in the Rna Kink-Turn Motif with 2-Aminopurine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 5 of Rna Kink-Turn Motif with 2-Aminopurine within 5.0Å range: probe atom residue distance (Å) B Occ B:Co101 b:61.5 occ:1.00 O6 B:G14 2.2 71.3 1.0 C6 B:G14 3.3 73.2 1.0 O2' A:G7 4.2 66.1 1.0 OP2 B:G13 4.2 78.8 1.0 N1 B:G14 4.2 72.8 1.0 C5 B:G14 4.3 71.9 1.0 N7 B:G14 4.5 75.3 1.0 N7 B:G13 4.6 69.3 1.0 OP2 B:G12 4.6 67.4 1.0 O6 B:G15 4.9 63.4 1.0

Cobalt binding site 6 out of 6 in the Rna Kink-Turn Motif with 2-Aminopurine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 6 of Rna Kink-Turn Motif with 2-Aminopurine within 5.0Å range: probe atom residue distance (Å) B Occ B:Co102 b:107.5 occ:0.25 O6 B:G1 3.9 61.9 1.0 N7 B:G1 4.6 59.4 1.0 C6 B:G1 4.8 57.3 1.0

J.Kondo, S.Saisu. Rna Kink-Turn Motif with 2-Aminopurine To Be Published.