Cobalt in PDB 7ei8: Rna Kink-Turn Motif with 2-Aminopurine

The structure of Rna Kink-Turn Motif with 2-Aminopurine, PDB code: 7ei8 was solved by J.Kondo, S.Saisu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.26 / 3.10
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	115.124, 42.895, 56.269, 90, 116.04, 90
R / Rfree (%)	19.6 / 25.7

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Cobalt atom in the Rna Kink-Turn Motif with 2-Aminopurine (pdb code 7ei8). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 14 binding sites of Cobalt where determined in the Rna Kink-Turn Motif with 2-Aminopurine, PDB code: 7ei8:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Cobalt binding site 1 out of 14 in the Rna Kink-Turn Motif with 2-Aminopurine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Rna Kink-Turn Motif with 2-Aminopurine within 5.0Å range: probe atom residue distance (Å) B Occ A:Co101 b:90.7 occ:1.00 OP2 A:G14 4.0 60.7 1.0 N7 A:G15 4.3 66.2 1.0 O6 A:G15 4.3 59.0 1.0

Cobalt binding site 2 out of 14 in the Rna Kink-Turn Motif with 2-Aminopurine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Rna Kink-Turn Motif with 2-Aminopurine within 5.0Å range: probe atom residue distance (Å) B Occ A:Co102 b:76.2 occ:1.00 O6 A:G13 3.8 66.6 1.0 O6 A:G14 4.1 60.3 1.0 N7 A:G12 4.2 62.1 1.0 N7 A:G13 4.4 60.4 1.0 O6 A:G12 4.5 67.5 1.0 C6 A:G13 4.7 63.2 1.0 C6 A:G14 4.8 55.2 1.0 C5 A:G12 5.0 59.8 1.0

Cobalt binding site 3 out of 14 in the Rna Kink-Turn Motif with 2-Aminopurine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Rna Kink-Turn Motif with 2-Aminopurine within 5.0Å range: probe atom residue distance (Å) B Occ B:Co101 b:112.5 occ:1.00 OP2 B:G14 3.3 80.8 1.0 N7 B:G15 3.6 74.8 1.0 P B:G14 4.2 100.4 1.0 O6 B:G15 4.2 72.2 1.0 O5' B:G14 4.4 91.4 1.0 OP1 B:G14 4.4 93.3 1.0 C8 B:G15 4.5 68.6 1.0 C5 B:G15 4.6 65.1 1.0 C6 B:G15 4.8 68.4 1.0

Cobalt binding site 4 out of 14 in the Rna Kink-Turn Motif with 2-Aminopurine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Rna Kink-Turn Motif with 2-Aminopurine within 5.0Å range: probe atom residue distance (Å) B Occ B:Co102 b:79.1 occ:0.50 N7 B:G2 3.9 75.2 1.0 O6 B:G2 4.1 76.2 1.0 N7 B:G1 4.3 75.9 1.0 C5 B:G2 4.7 79.8 1.0 C6 B:G2 4.8 80.1 1.0 C8 B:G1 4.9 75.4 1.0 C8 B:G2 5.0 72.3 1.0

Cobalt binding site 5 out of 14 in the Rna Kink-Turn Motif with 2-Aminopurine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 5 of Rna Kink-Turn Motif with 2-Aminopurine within 5.0Å range: probe atom residue distance (Å) B Occ B:Co103 b:86.3 occ:1.00 O6 B:G13 3.0 56.3 1.0 N7 B:G13 3.7 69.5 1.0 O6 B:G12 3.8 60.3 1.0 N7 B:G12 3.8 63.8 1.0 O6 B:G14 3.8 64.6 1.0 C6 B:G13 3.9 61.6 1.0 C6 B:G14 4.1 64.0 1.0 C5 B:G13 4.2 65.2 1.0 C6 B:G12 4.2 64.8 1.0 C5 B:G12 4.3 62.5 1.0 N1 B:G14 4.3 60.6 1.0 C5 B:G14 4.7 64.1 1.0 C8 B:G12 4.8 63.1 1.0 C8 B:G13 5.0 71.4 1.0

Cobalt binding site 6 out of 14 in the Rna Kink-Turn Motif with 2-Aminopurine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 6 of Rna Kink-Turn Motif with 2-Aminopurine within 5.0Å range: probe atom residue distance (Å) B Occ C:Co101 b:85.1 occ:0.50 O6 C:G1 4.1 65.5 1.0 N7 A:G1 4.4 51.8 1.0 N7 C:G1 4.5 55.2 1.0 O6 A:G1 4.6 59.6 1.0 C6 C:G1 4.9 59.1 1.0

Cobalt binding site 7 out of 14 in the Rna Kink-Turn Motif with 2-Aminopurine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 7 of Rna Kink-Turn Motif with 2-Aminopurine within 5.0Å range: probe atom residue distance (Å) B Occ C:Co102 b:72.9 occ:1.00 O6 C:G14 3.9 71.3 1.0 O6 C:G12 4.3 73.3 1.0 O6 C:G13 4.3 68.2 1.0 N7 C:G12 4.4 68.2 1.0 C6 C:G14 4.5 69.7 1.0 N7 C:G13 4.6 71.1 1.0 N1 C:G14 4.7 67.4 1.0 C6 C:G12 4.9 69.6 1.0 C5 C:G12 5.0 69.4 1.0

Cobalt binding site 8 out of 14 in the Rna Kink-Turn Motif with 2-Aminopurine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 8 of Rna Kink-Turn Motif with 2-Aminopurine within 5.0Å range: probe atom residue distance (Å) B Occ C:Co103 b:89.7 occ:1.00 O6 C:G15 3.2 73.7 1.0 N7 C:G15 3.9 75.4 1.0 C6 C:G15 4.1 74.6 1.0 OP2 C:G14 4.1 62.0 1.0 C5 C:G15 4.4 72.7 1.0

Cobalt binding site 9 out of 14 in the Rna Kink-Turn Motif with 2-Aminopurine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 9 of Rna Kink-Turn Motif with 2-Aminopurine within 5.0Å range: probe atom residue distance (Å) B Occ C:Co104 b:123.5 occ:1.00 OP2 C:2PR4 4.5 59.1 1.0

Cobalt binding site 10 out of 14 in the Rna Kink-Turn Motif with 2-Aminopurine


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 10 of Rna Kink-Turn Motif with 2-Aminopurine within 5.0Å range: probe atom residue distance (Å) B Occ C:Co105 b:74.5 occ:1.00 O6 D:G17 2.9 53.3 1.0 N1 C:2PR4 3.2 42.9 1.0 C6 C:2PR4 3.6 48.8 1.0 C6 D:G17 3.9 53.8 1.0 C2 C:2PR4 4.2 47.9 1.0 N7 D:G17 4.2 50.8 1.0 N4 C:C3 4.3 53.5 1.0 N2 C:2PR4 4.4 53.7 1.0 C5 D:G17 4.4 51.4 1.0 C5 C:2PR4 4.9 46.8 1.0

J.Kondo, S.Saisu. Rna Kink-Turn Motif with 2-Aminopurine To Be Published.