Cobalt in PDB 7kv1: Surface Glycan-Binding Protein A From Bacteroides Uniformis

The structure of Surface Glycan-Binding Protein A From Bacteroides Uniformis, PDB code: 7kv1 was solved by K.Tamura, H.Brumer, F.Van Petegem, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.81 / 1.86
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	76.27, 53.583, 126.85, 90, 93.04, 90
R / Rfree (%)	16.7 / 20.9

The binding sites of Cobalt atom in the Surface Glycan-Binding Protein A From Bacteroides Uniformis (pdb code 7kv1). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Surface Glycan-Binding Protein A From Bacteroides Uniformis, PDB code: 7kv1:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Surface Glycan-Binding Protein A From Bacteroides Uniformis


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Surface Glycan-Binding Protein A From Bacteroides Uniformis within 5.0Å range: probe atom residue distance (Å) B Occ A:Co601 b:23.1 occ:1.00 CO A:NCO601 0.0 23.1 1.0 N4 A:NCO601 2.0 22.7 1.0 N6 A:NCO601 2.0 24.6 1.0 N2 A:NCO601 2.0 24.5 1.0 N1 A:NCO601 2.0 22.9 1.0 N5 A:NCO601 2.0 22.1 1.0 N3 A:NCO601 2.1 25.5 1.0 O A:ILE261 3.7 20.8 1.0 O A:SER263 3.8 31.0 1.0 O A:PHE266 3.8 22.6 1.0 OH A:TYR408 4.3 21.4 1.0 O A:HOH948 4.5 49.6 1.0 C A:ILE261 4.8 21.9 1.0 C A:SER263 4.9 31.0 1.0 O A:HOH968 5.0 51.2 1.0

Cobalt binding site 2 out of 2 in the Surface Glycan-Binding Protein A From Bacteroides Uniformis


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Surface Glycan-Binding Protein A From Bacteroides Uniformis within 5.0Å range: probe atom residue distance (Å) B Occ B:Co601 b:24.3 occ:1.00 CO B:NCO601 0.0 24.3 1.0 N4 B:NCO601 2.0 23.5 1.0 N6 B:NCO601 2.0 24.8 1.0 N2 B:NCO601 2.0 25.7 1.0 N3 B:NCO601 2.0 24.1 1.0 N1 B:NCO601 2.0 25.2 1.0 N5 B:NCO601 2.0 25.6 1.0 O B:ILE261 3.6 22.8 1.0 O B:PHE266 3.7 25.9 1.0 O B:SER263 3.8 24.9 1.0 OH B:TYR408 4.4 22.4 1.0 O B:HOH908 4.5 40.1 1.0 O B:HOH818 4.6 22.3 1.0 C B:ILE261 4.7 25.9 1.0 C B:SER263 4.9 28.2 1.0 C B:PHE266 4.9 23.5 1.0

K.Tamura, G.Dejean, F.Van Petegem, H.Brumer. Distinct Protein Architectures Mediate Species-Specific Beta-Glucan Binding and Metabolism in the Human Gut Microbiota J.Biol.Chem. 2021.
ISSN: ESSN 1083-351X