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Cobalt in PDB 7mky: Sars-Cov-2 Frameshifting Pseudoknot Rna

Protein crystallography data

The structure of Sars-Cov-2 Frameshifting Pseudoknot Rna, PDB code: 7mky was solved by C.P.Jones, A.R.Ferre-D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.43 / 1.31
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.371, 39.206, 38.803, 90, 97.98, 90
R / Rfree (%) 15.4 / 18.8

Other elements in 7mky:

The structure of Sars-Cov-2 Frameshifting Pseudoknot Rna also contains other interesting chemical elements:

Magnesium (Mg) 9 atoms
Sodium (Na) 4 atoms
Potassium (K) 2 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Sars-Cov-2 Frameshifting Pseudoknot Rna (pdb code 7mky). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Sars-Cov-2 Frameshifting Pseudoknot Rna, PDB code: 7mky:

Cobalt binding site 1 out of 1 in 7mky

Go back to Cobalt Binding Sites List in 7mky
Cobalt binding site 1 out of 1 in the Sars-Cov-2 Frameshifting Pseudoknot Rna


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Sars-Cov-2 Frameshifting Pseudoknot Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co101

b:21.5
occ:1.00
CO A:NCO101 0.0 21.5 1.0
N4 A:NCO101 2.0 21.9 1.0
N5 A:NCO101 2.0 22.7 1.0
N2 A:NCO101 2.0 22.5 1.0
N6 A:NCO101 2.0 20.8 1.0
N3 A:NCO101 2.0 20.8 1.0
N1 A:NCO101 2.0 21.5 1.0
OP2 A:C17 4.0 20.6 1.0
O A:HOH266 4.1 27.3 1.0
O A:HOH334 4.1 31.5 1.0
O A:HOH412 4.1 23.5 1.0
N7 A:G9 4.1 19.5 1.0
N7 A:G18 4.2 16.6 1.0
O6 A:G9 4.3 18.0 1.0
O A:HOH227 4.4 27.8 1.0
O A:HOH322 4.4 29.6 1.0
O A:HOH346 4.5 29.4 1.0
OP2 A:G18 4.5 18.1 1.0
O6 A:G18 4.7 19.3 1.0
C5 A:G9 4.9 17.8 1.0
C6 A:G9 5.0 17.4 1.0
N7 A:A8 5.0 20.9 1.0

Reference:

C.P.Jones, A.R.Ferre-D'amare. Sars-Cov-2 Frameshifting Pseudoknot Rna To Be Published.
Page generated: Sat Jul 10 13:30:50 2021

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