Chemical elements
  Cobalt
    Isotopes
    Energy
    Production
    Preparation
    Application
    Physical Properties
    Chemical Properties
    Compounds
    PDB 1a0c-1epy
    PDB 1et4-1k7y
    PDB 1k98-1r6x
    PDB 1r8k-1v9b
    PDB 1vl3-212d
    PDB 222d-2eff
    PDB 2ehd-2j3z
    PDB 2j4j-2r1p
    PDB 2r2s-331d
    PDB 362d-3fqw
    PDB 3ft6-3igy
    PDB 3igz-3o0n
    PDB 3o0o-4req
    PDB 4xim-9icb
      4xim
      5cel
      5req
      6cel
      6req
      7cel
      7req
      9icb

Cobalt in the structure of Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor Complex (pdb 7req)






The binding sites of Cobalt atom in the structure of Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor Complex (pdb code 7req). This binding sites where shown with 5.0 Angstroms radius around Cobalt atom.
The 7req structure was solved by P.R.EVANS, F.MANCIA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)20.0-2.2
Space groupP1211
a (A)122.534
b (A)161.398
c (A)86.973
alpha (°)90.00
beta (°)104.81
gamma (°)90.00
Rfactor (%)18.3
Rfree (%)22.9


Cobalt Binding Sites:

Cobalt binding site 1 out of 2 in 7req


Cobalt binding site 1 out of 2 in 7req
Click to enlarge
stereopicture of Cobalt binding site 1 out of 2 in 7req
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cobalt in the PDB 7req. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His610, A: B121800, A: Hoh2122, A: Hoh2138, A: Hoh2162,

conact list:


AtomAtomDistance (A)
CoNE2 A:His6102.33
CoND1 A:His6104.41
CoCD2 A:His6103.33
CoCE1 A:His6103.27
CoCG A:His6104.47
CoC18 A:B1218004.11
CoC11 A:B1218002.86
CoC1 A:B1218002.87
CoC8 A:B1218004.21
CoC2 A:B1218004.13
CoC46 A:B1218004.75
CoN22 A:B1218001.95
CoC35 A:B1218004.95
CoC17 A:B1218004.15
CoN21 A:B1218001.88
CoC12 A:B1218004.16
CoC19 A:B1218002.84
CoCO A:B1218000.00
CoC15 A:B1218003.34
CoC16 A:B1218002.86
CoC6 A:B1218003.05
CoC5 A:B1218003.42
CoC4 A:B1218002.94
CoC10 A:B1218003.15
CoC13 A:B1218004.16
CoC20 A:B1218003.56
CoC48 A:B1218004.71
CoC42 A:B1218004.60
CoC9 A:B1218002.83
CoC54 A:B1218004.74
CoC14 A:B1218002.90
CoN24 A:B1218001.85
CoN23 A:B1218001.85
CoC7 A:B1218004.34
CoC53 A:B1218004.86
CoC3 A:B1218004.20
CoC26 A:B1218004.49
CoO A:Hoh21224.55
CoO A:Hoh21384.77
CoO A:Hoh21622.63

interactive model:


Cobalt binding site 2 out of 2 in 7req


Cobalt binding site 2 out of 2 in 7req
Click to enlarge
stereopicture of Cobalt binding site 2 out of 2 in 7req
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cobalt in the PDB 7req. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cobalt atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: His610, C: B122800, C: Hoh3121, C: Hoh3138, C: Hoh3163,

conact list:


AtomAtomDistance (A)
CoNE2 C:His6102.48
CoND1 C:His6104.61
CoCD2 C:His6103.37
CoCE1 C:His6103.50
CoCG C:His6104.57
CoC18 C:B1228004.13
CoC11 C:B1228002.85
CoC1 C:B1228002.87
CoC8 C:B1228004.21
CoC2 C:B1228004.14
CoC46 C:B1228004.73
CoN22 C:B1228001.91
CoC35 C:B1228004.87
CoC17 C:B1228004.17
CoN21 C:B1228001.85
CoC12 C:B1228004.16
CoC19 C:B1228002.89
CoCO C:B1228000.00
CoC15 C:B1228003.38
CoC16 C:B1228002.88
CoC6 C:B1228002.96
CoC5 C:B1228003.32
CoC4 C:B1228002.88
CoC10 C:B1228003.21
CoC13 C:B1228004.16
CoC20 C:B1228003.58
CoC48 C:B1228004.75
CoC42 C:B1228004.65
CoC9 C:B1228002.85
CoC54 C:B1228004.68
CoC14 C:B1228002.89
CoN24 C:B1228001.90
CoN23 C:B1228001.84
CoC7 C:B1228004.27
CoC53 C:B1228004.91
CoC3 C:B1228004.17
CoC26 C:B1228004.52
CoO C:Hoh31214.37
CoO C:Hoh31384.92
CoO C:Hoh31632.60

interactive model:




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