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Cobalt in PDB 7rzk: Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data

Protein crystallography data

The structure of Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data, PDB code: 7rzk was solved by M.G.Cuypers, C.Subramanian, C.O.Rock, S.W.White, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.95 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.005, 57.521, 81.248, 90, 90, 90
R / Rfree (%) 15.1 / 19

Other elements in 7rzk:

The structure of Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data (pdb code 7rzk). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 6 binding sites of Cobalt where determined in the Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data, PDB code: 7rzk:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5; 6;

Cobalt binding site 1 out of 6 in 7rzk

Go back to Cobalt Binding Sites List in 7rzk
Cobalt binding site 1 out of 6 in the Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co304

b:22.4
occ:0.51
 MG A:MG303 0.2 22.7 0.5
O A:HOH481 2.0 22.7 1.0
OD2 A:ASP38 2.1 23.8 1.0
OD2 A:ASP40 2.1 20.0 1.0
O2B A:ADP301 2.2 20.3 1.0
O A:HOH420 2.2 22.1 1.0
O A:HOH491 2.4 24.7 1.0
CG A:ASP38 3.1 24.7 1.0
CG A:ASP40 3.1 23.2 1.0
PB A:ADP301 3.2 22.5 1.0
OD1 A:ASP40 3.4 21.0 1.0
OD1 A:ASP38 3.5 19.0 1.0
O3B A:ADP301 3.5 19.7 1.0
MG A:MG302 3.5 20.0 1.0
O A:HOH490 3.9 38.4 1.0
O1B A:ADP301 4.0 28.9 1.0
ND2 A:ASN44 4.2 22.0 1.0
O A:HOH562 4.4 40.3 1.0
CB A:ASP38 4.4 23.1 1.0
CB A:ASP40 4.5 23.7 1.0
O3A A:ADP301 4.6 22.3 1.0
O A:HOH411 4.6 40.1 1.0
O A:HOH432 4.7 19.1 1.0
O1A A:ADP301 4.9 18.7 1.0

Cobalt binding site 2 out of 6 in 7rzk

Go back to Cobalt Binding Sites List in 7rzk
Cobalt binding site 2 out of 6 in the Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co305

b:85.6
occ:1.00
 O A:HOH533 2.3 61.1 1.0
OE2 A:GLU103 2.4 72.4 1.0
O A:HOH550 2.7 86.7 1.0
O A:HOH475 2.7 62.3 1.0
CD A:GLU103 3.4 56.7 1.0
O A:HOH479 3.5 62.4 1.0
OE1 A:GLU103 3.9 48.3 1.0
NZ A:LYS4 4.2 35.5 1.0
CE A:LYS4 4.5 52.8 1.0
CG A:GLU103 4.6 28.8 1.0
CD A:LYS4 4.8 31.9 1.0

Cobalt binding site 3 out of 6 in 7rzk

Go back to Cobalt Binding Sites List in 7rzk
Cobalt binding site 3 out of 6 in the Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co306

b:143.4
occ:1.00
 O A:HOH555 2.6 74.8 1.0
O A:HOH532 2.8 57.6 1.0
O A:HOH575 3.0 88.4 1.0
OE2 A:GLU101 3.2 60.1 1.0
OE1 A:GLU101 3.4 48.0 1.0
CD A:GLU101 3.7 49.5 1.0
O A:HOH465 4.9 38.3 1.0

Cobalt binding site 4 out of 6 in 7rzk

Go back to Cobalt Binding Sites List in 7rzk
Cobalt binding site 4 out of 6 in the Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co307

b:111.6
occ:1.00
 OE1 A:GLU57 2.6 43.0 1.0
O A:HOH568 3.4 65.8 1.0
CD A:GLU57 3.8 38.4 1.0
CG A:GLU54 3.9 41.5 1.0
OE2 A:GLU54 4.4 62.3 1.0
OE2 A:GLU57 4.4 41.1 1.0
CD A:GLU54 4.6 58.4 1.0
CA A:GLU54 4.8 25.0 1.0
NE A:ARG53 4.9 35.5 1.0
CB A:GLU57 4.9 29.6 1.0
CB A:GLU54 4.9 31.5 1.0
CG A:GLU57 4.9 32.8 1.0

Cobalt binding site 5 out of 6 in 7rzk

Go back to Cobalt Binding Sites List in 7rzk
Cobalt binding site 5 out of 6 in the Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 5 of Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co308

b:92.7
occ:1.00
 O A:HOH414 2.7 40.9 1.0
O A:HOH545 2.8 52.6 1.0
O A:HOH566 3.8 52.3 1.0
O A:MET125 4.0 27.8 1.0
O A:LYS122 4.1 23.1 1.0
O A:VAL124 4.1 26.1 1.0
CA A:MET125 4.4 28.6 1.0
C A:MET125 4.6 27.5 1.0
C A:LYS122 4.9 22.6 1.0
O A:TYR121 4.9 25.3 1.0
C A:VAL124 5.0 22.9 1.0

Cobalt binding site 6 out of 6 in 7rzk

Go back to Cobalt Binding Sites List in 7rzk
Cobalt binding site 6 out of 6 in the Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 6 of Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co309

b:107.2
occ:1.00
 O A:HOH516 2.7 50.9 1.0
O A:HOH408 2.7 45.7 1.0
OE2 A:GLU118 3.1 51.7 1.0
OE1 A:GLU118 3.5 44.0 1.0
NE2 A:GLN114 3.6 63.6 1.0
CD A:GLU118 3.7 53.0 1.0
CD A:GLN114 4.6 61.1 1.0

Reference:

M.G.Cuypers, C.Subramanian, C.O.Rock, S.W.White. Co-Soak Crystal Structure of the N-Terminal Domain of Staphylococcus Aureus Fatty Acid Kinase A (Faka, Residues 1-208) in Complex with Adp to 1.9 Angstrom Resolution - Sad Data To Be Published.
Page generated: Tue Jul 30 19:27:52 2024

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