Cobalt in PDB 7su2: Crystal Structure of A Co-Bound RIDC1 Variant

The structure of Crystal Structure of A Co-Bound RIDC1 Variant, PDB code: 7su2 was solved by E.Golub, A.Kakkis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.00 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	47.875, 90.024, 52.042, 90, 95.91, 90
R / Rfree (%)	18.4 / 23.2

The structure of Crystal Structure of A Co-Bound RIDC1 Variant also contains other interesting chemical elements:

Iron

(Fe)

4 atoms

The binding sites of Cobalt atom in the Crystal Structure of A Co-Bound RIDC1 Variant (pdb code 7su2). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 4 binding sites of Cobalt where determined in the Crystal Structure of A Co-Bound RIDC1 Variant, PDB code: 7su2:
Jump to Cobalt binding site number: 1; 2; 3; 4;

Cobalt binding site 1 out of 4 in the Crystal Structure of A Co-Bound RIDC1 Variant


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of A Co-Bound RIDC1 Variant within 5.0Å range: probe atom residue distance (Å) B Occ D:Co202 b:45.3 occ:1.00 OE2 D:GLU81 1.7 45.6 1.0 NE2 A:HIS77 2.0 43.4 1.0 O D:HOH301 2.0 36.7 1.0 NE2 D:HIS77 2.2 46.8 1.0 OE2 A:GLU81 2.2 48.2 1.0 CD D:GLU81 2.8 30.8 1.0 CE1 A:HIS77 2.9 42.6 1.0 CD2 A:HIS77 3.0 34.4 1.0 CD A:GLU81 3.0 35.1 1.0 CE1 D:HIS77 3.0 44.4 1.0 OE1 A:GLU81 3.1 41.4 1.0 O D:HOH302 3.2 44.6 1.0 CD2 D:HIS77 3.3 33.1 1.0 OE1 D:GLU81 3.4 32.2 1.0 CG D:GLU81 4.0 37.1 1.0 ND1 A:HIS77 4.0 41.6 1.0 CG A:HIS77 4.1 34.1 1.0 ND1 D:HIS77 4.2 50.3 1.0 CG D:HIS77 4.3 48.1 1.0 CG A:GLU81 4.5 51.3 1.0

Cobalt binding site 2 out of 4 in the Crystal Structure of A Co-Bound RIDC1 Variant


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of A Co-Bound RIDC1 Variant within 5.0Å range: probe atom residue distance (Å) B Occ A:Co202 b:48.3 occ:1.00 N A:ALA1 2.0 44.7 1.0 OD2 A:ASP39 2.0 54.3 1.0 O A:ALA1 2.4 41.3 1.0 OD1 A:ASP39 2.6 39.1 1.0 CG A:ASP39 2.6 37.0 1.0 CA A:ALA1 2.9 48.3 1.0 C A:ALA1 3.0 46.1 1.0 CB A:ALA1 3.8 41.9 1.0 CB A:ASP39 4.1 32.5 1.0 N A:ASP2 4.2 32.5 1.0 O A:HOH301 4.4 42.2 1.0 OD1 A:ASN6 4.6 31.5 1.0 ND2 A:ASN6 4.7 28.1 1.0

Cobalt binding site 3 out of 4 in the Crystal Structure of A Co-Bound RIDC1 Variant


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Crystal Structure of A Co-Bound RIDC1 Variant within 5.0Å range: probe atom residue distance (Å) B Occ C:Co202 b:25.4 occ:1.00 OE2 G:GLU81 2.0 24.3 1.0 NE2 C:HIS77 2.1 20.8 1.0 NE2 G:HIS77 2.1 21.4 1.0 OE1 C:GLU81 2.2 30.3 1.0 OE2 C:GLU81 2.2 30.7 1.0 CD C:GLU81 2.4 25.4 1.0 OE1 G:GLU81 2.4 20.7 1.0 CD G:GLU81 2.5 24.8 1.0 CD2 C:HIS77 2.9 21.7 1.0 CD2 G:HIS77 3.0 25.0 1.0 CE1 C:HIS77 3.2 24.2 1.0 CE1 G:HIS77 3.2 26.2 1.0 CG C:GLU81 3.9 48.1 1.0 CG G:GLU81 4.1 31.7 1.0 CG C:HIS77 4.1 24.4 1.0 CG G:HIS77 4.1 23.5 1.0 ND1 C:HIS77 4.2 21.4 1.0 ND1 G:HIS77 4.2 25.1 1.0 NZ C:LYS83 4.5 34.5 1.0 NZ G:LYS83 4.5 30.1 1.0 CD2 G:LEU78 4.6 20.4 1.0 CB C:GLU81 4.7 37.1 1.0 CD2 C:LEU78 4.7 27.3 1.0 CD C:LYS83 4.8 30.4 1.0 O C:HIS77 4.8 29.6 1.0 CE C:LYS83 4.8 35.1 1.0 CD G:LYS83 4.9 25.4 1.0 CE G:LYS83 5.0 29.4 1.0

Cobalt binding site 4 out of 4 in the Crystal Structure of A Co-Bound RIDC1 Variant


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Crystal Structure of A Co-Bound RIDC1 Variant within 5.0Å range: probe atom residue distance (Å) B Occ G:Co202 b:35.3 occ:1.00 OD1 G:ASP2 2.2 40.3 1.0 OD2 G:ASP5 2.5 39.0 1.0 CG G:ASP5 3.0 33.4 1.0 CG G:ASP2 3.0 39.3 1.0 OD1 G:ASP5 3.1 30.2 1.0 OD2 G:ASP2 3.2 34.3 1.0 CB G:ASP5 4.4 22.2 1.0 CB G:ASP2 4.5 28.1 1.0 N G:ASP5 4.9 23.8 1.0

E.Golub, A.Kakkis. Crystal Structure of A Co-Bound RIDC1 Variant To Be Published.