Cobalt in PDB 7u1y: Structure of SPAC806.04C Protein From Fission Yeast Bound to ALF4 and CO2+

The structure of Structure of SPAC806.04C Protein From Fission Yeast Bound to ALF4 and CO2+, PDB code: 7u1y was solved by A.Jacewicz, A.M.Sanchez, S.Shuman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.28 / 1.81
Space group	I 4
Cell size a, b, c (Å), α, β, γ (°)	133.721, 133.721, 56.69, 90, 90, 90
R / Rfree (%)	15.6 / 18.2

The structure of Structure of SPAC806.04C Protein From Fission Yeast Bound to ALF4 and CO2+ also contains other interesting chemical elements:

Potassium	(K)	1 atom
Aluminium	(Al)	1 atom
Fluorine	(F)	4 atoms

The binding sites of Cobalt atom in the Structure of SPAC806.04C Protein From Fission Yeast Bound to ALF4 and CO2+ (pdb code 7u1y). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Structure of SPAC806.04C Protein From Fission Yeast Bound to ALF4 and CO2+, PDB code: 7u1y:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the Structure of SPAC806.04C Protein From Fission Yeast Bound to ALF4 and CO2+


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Structure of SPAC806.04C Protein From Fission Yeast Bound to ALF4 and CO2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Co502 b:14.4 occ:0.70 F1 A:ALF501 1.9 20.1 1.0 OD1 A:ASP286 2.0 17.6 1.0 OD1 A:ASP248 2.1 13.9 1.0 O A:HOH688 2.1 17.1 1.0 O A:HOH759 2.1 18.0 1.0 OD1 A:ASN249 2.1 16.4 1.0 CG A:ASP286 3.0 16.6 1.0 CG A:ASP248 3.1 17.8 1.0 CG A:ASN249 3.1 19.0 1.0 OD2 A:ASP248 3.4 15.3 1.0 OD2 A:ASP286 3.4 18.0 1.0 AL A:ALF501 3.5 17.8 1.0 ND2 A:ASN249 3.5 13.3 1.0 F3 A:ALF501 3.7 18.3 1.0 F4 A:ALF501 4.1 21.3 1.0 OD1 A:ASP195 4.1 25.2 1.0 OG A:SER285 4.1 19.5 1.0 O A:HOH957 4.2 23.8 1.0 CB A:ASN249 4.3 15.4 1.0 O A:HOH758 4.3 33.8 0.6 C A:ASP248 4.3 17.1 1.0 O A:PHE283 4.4 16.1 1.0 CB A:ASP286 4.4 15.7 1.0 N A:ASN249 4.4 14.5 1.0 CB A:ASP248 4.4 16.8 1.0 CG A:ASP195 4.4 23.9 1.0 O A:HOH854 4.4 20.9 1.0 CB A:PHE283 4.5 15.9 1.0 CA A:ASN249 4.5 14.7 1.0 N A:ASP286 4.5 14.9 1.0 CA A:ASP286 4.5 17.0 1.0 CA A:ASP248 4.6 16.7 1.0 O A:ASP248 4.7 16.1 1.0 OD2 A:ASP195 4.8 26.2 1.0 O A:HOH814 4.9 15.7 1.0 O A:HOH724 5.0 16.4 1.0 C A:SER285 5.0 15.9 1.0

Cobalt binding site 2 out of 2 in the Structure of SPAC806.04C Protein From Fission Yeast Bound to ALF4 and CO2+


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Structure of SPAC806.04C Protein From Fission Yeast Bound to ALF4 and CO2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Co503 b:24.8 occ:0.56 O A:HOH796 1.8 25.0 1.0 OG A:SER0 2.1 37.3 1.0 N A:SER0 2.2 36.4 1.0 CB A:SER0 2.7 32.4 1.0 CA A:SER0 2.8 33.9 1.0 C A:SER0 4.3 33.3 1.0 O A:HOH933 4.3 39.5 1.0 O A:HOH940 4.5 48.3 1.0 O A:SER0 4.8 32.8 1.0

A.M.Sanchez, A.Jacewicz, S.Shuman. Fission Yeast DUF89 and DUF8901 Are Cobalt/Nickel-Dependent Phosphatase-Pyrophosphatases That Act Via A Covalent Aspartyl-Phosphate Intermediate. J.Biol.Chem. V. 298 01851 2022.
ISSN: ESSN 1083-351X
PubMed: 35314193
DOI: 10.1016/J.JBC.2022.101851