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Cobalt in PDB 7w6v: Crystal Structure of A Dicobalt-Substituted Small Laccase at 2.47 Angstrom

Protein crystallography data

The structure of Crystal Structure of A Dicobalt-Substituted Small Laccase at 2.47 Angstrom, PDB code: 7w6v was solved by X.Yang, F.Wu, W.Wu, X.Chen, S.Fan, P.Yu, L.Mao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.43 / 2.47
Space group P 43 3 2
Cell size a, b, c (Å), α, β, γ (°) 178.03, 178.03, 178.03, 90, 90, 90
R / Rfree (%) 18.6 / 19.8

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of A Dicobalt-Substituted Small Laccase at 2.47 Angstrom (pdb code 7w6v). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the Crystal Structure of A Dicobalt-Substituted Small Laccase at 2.47 Angstrom, PDB code: 7w6v:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in 7w6v

Go back to Cobalt Binding Sites List in 7w6v
Cobalt binding site 1 out of 2 in the Crystal Structure of A Dicobalt-Substituted Small Laccase at 2.47 Angstrom


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of A Dicobalt-Substituted Small Laccase at 2.47 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co401

b:63.9
occ:1.00
NE2 A:HIS158 1.9 71.8 1.0
O A:HOH568 1.9 50.7 1.0
CD2 A:HIS158 2.9 68.2 1.0
CE1 A:HIS158 2.9 67.7 1.0
CO A:CO402 3.9 106.9 1.0
ND1 A:HIS158 4.0 50.1 1.0
CG A:HIS158 4.1 63.7 1.0
NE2 A:HIS102 4.4 67.6 1.0
CD2 A:HIS102 4.6 53.3 1.0

Cobalt binding site 2 out of 2 in 7w6v

Go back to Cobalt Binding Sites List in 7w6v
Cobalt binding site 2 out of 2 in the Crystal Structure of A Dicobalt-Substituted Small Laccase at 2.47 Angstrom


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of A Dicobalt-Substituted Small Laccase at 2.47 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co402

b:106.9
occ:1.00
O A:HOH568 2.0 50.7 1.0
NE2 A:HIS156 2.1 54.2 1.0
NE2 A:HIS104 2.1 58.2 1.0
CE1 A:HIS156 2.8 59.6 1.0
CE1 A:HIS104 3.0 47.5 1.0
CD2 A:HIS104 3.2 43.3 1.0
CD2 A:HIS156 3.3 41.5 1.0
CD2 A:HIS102 3.4 53.3 1.0
NE2 A:HIS102 3.7 67.6 1.0
CO A:CO401 3.9 63.9 1.0
ND1 A:HIS156 4.0 47.4 1.0
ND1 A:HIS104 4.1 45.6 1.0
CG A:HIS104 4.2 43.4 1.0
CG A:HIS156 4.3 48.0 1.0
CD2 A:HIS158 4.4 68.2 1.0
NE2 A:HIS158 4.6 71.8 1.0
CG A:HIS102 4.6 57.9 1.0
CB A:ALA266 4.7 59.5 1.0

Reference:

X.Yang, F.Wu, W.Wu, X.Chen, S.Fan, P.Yu, L.Mao. Small Laccase (Slac): A Versatile Artificial Metalloenzyme Scaffold Enabling Direct Bioelectrocatalysis in Solution Sci Adv V. 8 2022.
ISSN: ESSN 2375-2548
Page generated: Tue Apr 4 23:04:52 2023

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