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Cobalt in PDB 7w8m: Crystal Structure of Co-Type Nitrile Hydratase Mutant From Pseudomonas Thermophila - A129R

Enzymatic activity of Crystal Structure of Co-Type Nitrile Hydratase Mutant From Pseudomonas Thermophila - A129R

All present enzymatic activity of Crystal Structure of Co-Type Nitrile Hydratase Mutant From Pseudomonas Thermophila - A129R:
4.2.1.84;

Protein crystallography data

The structure of Crystal Structure of Co-Type Nitrile Hydratase Mutant From Pseudomonas Thermophila - A129R, PDB code: 7w8m was solved by D.Ma, Z.Y.Cheng, X.D.Hou, L.Peplowski, Q.P.Lai, K.Fu, D.J.Yin, Y.J.Rao, Z.M.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.37 / 2.60
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 65.517, 65.517, 183.754, 90, 90, 120
R / Rfree (%) 17.7 / 24

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of Co-Type Nitrile Hydratase Mutant From Pseudomonas Thermophila - A129R (pdb code 7w8m). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Co-Type Nitrile Hydratase Mutant From Pseudomonas Thermophila - A129R, PDB code: 7w8m:

Cobalt binding site 1 out of 1 in 7w8m

Go back to Cobalt Binding Sites List in 7w8m
Cobalt binding site 1 out of 1 in the Crystal Structure of Co-Type Nitrile Hydratase Mutant From Pseudomonas Thermophila - A129R


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Co-Type Nitrile Hydratase Mutant From Pseudomonas Thermophila - A129R within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co301

b:24.8
occ:1.00
 N A:CSO113 2.0 15.1 1.0
N A:SER112 2.1 17.8 1.0
SG A:CYS108 2.2 17.1 1.0
SG A:CSD111 2.2 15.8 1.0
SG A:CSO113 2.2 17.4 1.0
C A:SER112 2.7 18.0 1.0
CA A:SER112 2.9 18.5 1.0
CA A:CSO113 3.0 13.2 1.0
OD2 A:CSD111 3.1 22.4 1.0
C A:CSD111 3.1 11.6 1.0
CB A:CSO113 3.2 15.0 1.0
OD1 A:CSD111 3.2 40.7 1.0
O A:HOH429 3.2 17.0 1.0
CB A:CSD111 3.3 12.0 1.0
OD A:CSO113 3.3 31.8 1.0
CB A:CYS108 3.4 9.8 1.0
CA A:CSD111 3.5 10.7 1.0
N A:CSD111 3.8 8.9 1.0
O A:SER112 3.9 14.7 1.0
OG A:SER112 3.9 8.1 1.0
CB A:SER112 4.0 10.4 1.0
O A:CSD111 4.2 12.4 1.0
C A:CSO113 4.4 16.0 1.0
O A:CSO113 4.7 16.4 1.0
CA A:CYS108 4.8 13.9 1.0
C A:LEU110 4.9 11.3 1.0

Reference:

D.Ma, Z.Cheng, L.Peplowski, L.Han, Y.Xia, X.Hou, J.Guo, D.Yin, Y.Rao, Z.Zhou. Insight Into the Broadened Substrate Scope of Nitrile Hydratase By Static and Dynamic Structure Analysis. Chem Sci V. 13 8417 2022.
ISSN: ISSN 2041-6520
PubMed: 35919716
DOI: 10.1039/D2SC02319A
Page generated: Tue Jul 30 19:33:21 2024

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