Cobalt in PDB 7wj8: Complex Structure of Athppd-PYQ1

All present enzymatic activity of Complex Structure of Athppd-PYQ1:
1.13.11.27;

The structure of Complex Structure of Athppd-PYQ1, PDB code: 7wj8 was solved by G.-F.Yang, H.-Y.Lin, J.Dong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.35 / 1.81
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	76.716, 83.806, 62.007, 90, 100.41, 90
R / Rfree (%)	16.5 / 19.6

The binding sites of Cobalt atom in the Complex Structure of Athppd-PYQ1 (pdb code 7wj8). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Complex Structure of Athppd-PYQ1, PDB code: 7wj8:

Cobalt binding site 1 out of 1 in the Complex Structure of Athppd-PYQ1


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Complex Structure of Athppd-PYQ1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Co501 b:25.9 occ:1.00 OE1 A:GLU394 2.1 18.3 1.0 O7 A:0B8502 2.1 25.0 1.0 O10 A:0B8502 2.1 30.0 1.0 NE2 A:HIS226 2.3 18.8 1.0 NE2 A:HIS308 2.4 19.7 1.0 O A:HOH681 2.4 22.5 1.0 CD A:GLU394 3.1 21.8 1.0 CE1 A:HIS308 3.1 20.9 1.0 CE1 A:HIS226 3.2 16.8 1.0 C8 A:0B8502 3.2 37.0 1.0 C6 A:0B8502 3.4 33.5 1.0 CD2 A:HIS226 3.4 15.5 1.0 OE2 A:GLU394 3.5 19.8 1.0 CD2 A:HIS308 3.5 20.4 1.0 C5 A:0B8502 3.8 33.9 1.0 ND1 A:HIS226 4.3 19.8 1.0 CB A:ALA310 4.3 15.4 1.0 ND1 A:HIS308 4.4 16.6 1.0 C9 A:0B8502 4.4 38.5 1.0 CG2 A:VAL228 4.4 18.1 1.0 CE2 A:PHE381 4.4 21.1 1.0 O A:PHE419 4.4 24.5 1.0 CG A:GLU394 4.4 16.6 1.0 CG A:HIS226 4.5 17.1 1.0 CG A:HIS308 4.6 17.2 1.0 C1 A:0B8502 4.6 29.7 1.0 CB A:GLU394 4.7 15.2 1.0 CZ A:PHE381 4.7 23.3 1.0 CD2 A:PHE419 4.8 20.5 1.0 C22 A:0B8502 4.8 31.3 1.0 CB A:PHE419 4.9 24.1 1.0

X.Zeng, Y.Huang, J.Dong, X.Ma, J.X.Nan, W.Chen, H.Y.Lin, W.C.Yang, X.Liu, J.Yin, G.F.Yang. Design of An Hppd Fluorescent Probe and Visualization of Plant Responses to Abiotic Stress Adv Agrochem 2022.
DOI: 10.1016/J.AAC.2022.08.001