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Cobalt in PDB 7wjk: Complex Structure of Athppd-Zwj

Enzymatic activity of Complex Structure of Athppd-Zwj

All present enzymatic activity of Complex Structure of Athppd-Zwj:
1.13.11.27;

Protein crystallography data

The structure of Complex Structure of Athppd-Zwj, PDB code: 7wjk was solved by G.-F.Yang, H.-Y.Lin, J.Dong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.74 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 77.145, 84.08, 62.55, 90, 100.88, 90
R / Rfree (%) 20.8 / 24.2

Other elements in 7wjk:

The structure of Complex Structure of Athppd-Zwj also contains other interesting chemical elements:

Fluorine (F) 2 atoms

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Complex Structure of Athppd-Zwj (pdb code 7wjk). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Complex Structure of Athppd-Zwj, PDB code: 7wjk:

Cobalt binding site 1 out of 1 in 7wjk

Go back to Cobalt Binding Sites List in 7wjk
Cobalt binding site 1 out of 1 in the Complex Structure of Athppd-Zwj


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Complex Structure of Athppd-Zwj within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Co501

b:46.9
occ:1.00
O9 A:0I7502 2.1 46.8 1.0
OE1 A:GLU394 2.1 34.4 1.0
O10 A:0I7502 2.2 44.9 1.0
O A:HOH620 2.2 41.1 1.0
NE2 A:HIS226 2.4 36.6 1.0
NE2 A:HIS308 2.5 38.4 1.0
CE1 A:HIS308 3.2 42.5 1.0
C7 A:0I7502 3.2 54.1 1.0
CD A:GLU394 3.2 35.1 1.0
CE1 A:HIS226 3.2 32.3 1.0
C6 A:0I7502 3.3 50.8 1.0
CD2 A:HIS226 3.4 32.3 1.0
OE2 A:GLU394 3.6 36.3 1.0
CD2 A:HIS308 3.7 33.8 1.0
C5 A:0I7502 3.7 47.5 1.0
CB A:ALA310 4.3 30.7 1.0
CG2 A:VAL228 4.3 32.7 1.0
ND1 A:HIS308 4.4 34.7 1.0
C8 A:0I7502 4.4 57.1 1.0
ND1 A:HIS226 4.4 34.7 1.0
O A:PHE419 4.4 44.6 1.0
CG A:GLU394 4.5 31.2 1.0
CG A:HIS226 4.5 30.2 1.0
CE2 A:PHE381 4.6 43.5 1.0
C1 A:0I7502 4.7 48.0 1.0
CG A:HIS308 4.7 31.5 1.0
CB A:GLU394 4.7 32.9 1.0
CD2 A:PHE419 4.8 36.6 1.0
CB A:PHE419 4.8 45.0 1.0

Reference:

G.-F.Yang, H.-Y.Lin, J.Dong. Complex Structure of Athppd-PYQ1 To Be Published.
Page generated: Tue Apr 4 23:04:52 2023

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