Cobalt in PDB 7x5x: Crystal Structure of Athppd-YH20533 Complex

All present enzymatic activity of Crystal Structure of Athppd-YH20533 Complex:
1.13.11.27;

The structure of Crystal Structure of Athppd-YH20533 Complex, PDB code: 7x5x was solved by H.-Y.Lin, J.Dong, G.-F.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.86 / 2.20
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	77.264, 84.063, 63.003, 90, 100.66, 90
R / Rfree (%)	18.9 / 24.9

The structure of Crystal Structure of Athppd-YH20533 Complex also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Cobalt atom in the Crystal Structure of Athppd-YH20533 Complex (pdb code 7x5x). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total only one binding site of Cobalt was determined in the Crystal Structure of Athppd-YH20533 Complex, PDB code: 7x5x:

Cobalt binding site 1 out of 1 in the Crystal Structure of Athppd-YH20533 Complex


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of Athppd-YH20533 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Co501 b:39.6 occ:1.00 O9 A:9V4502 2.1 33.9 1.0 N12 A:9V4502 2.1 33.4 1.0 OE1 A:GLU394 2.3 31.5 1.0 NE2 A:HIS226 2.4 25.2 1.0 NE2 A:HIS308 2.5 26.0 1.0 O A:HOH614 2.6 31.5 1.0 C8 A:9V4502 3.1 36.4 1.0 N13 A:9V4502 3.1 32.5 1.0 C11 A:9V4502 3.1 33.7 1.0 CD A:GLU394 3.3 34.0 1.0 CE1 A:HIS226 3.3 25.2 1.0 CD2 A:HIS226 3.4 28.1 1.0 CE1 A:HIS308 3.4 29.2 1.0 CD2 A:HIS308 3.5 28.4 1.0 N10 A:9V4502 3.5 35.6 1.0 OE2 A:GLU394 3.6 30.5 1.0 N15 A:9V4502 4.2 33.5 1.0 N14 A:9V4502 4.2 33.5 1.0 ND1 A:HIS226 4.4 25.8 1.0 C1 A:9V4502 4.4 38.0 1.0 O A:PHE419 4.4 37.7 1.0 CG A:HIS226 4.5 24.2 1.0 CG2 A:VAL228 4.5 26.5 1.0 ND1 A:HIS308 4.6 25.5 1.0 CB A:ALA310 4.6 23.9 1.0 CG A:HIS308 4.6 27.0 1.0 CG A:GLU394 4.6 29.5 1.0 CE1 A:PHE381 4.8 37.7 1.0 CB A:PHE419 4.8 34.0 1.0 CD2 A:PHE419 4.8 32.4 1.0 CB A:GLU394 4.9 27.1 1.0 O19 A:9V4502 4.9 40.5 1.0 O A:HOH663 4.9 33.2 1.0

J.Dong, J.Dong, X.H.Yu, Y.C.Yan, J.X.Nan, B.He, B.Q.Ye, W.C.Yang, H.Y.Lin, G.F.Yang. Structural Insights of 4-Hydrophenylpyruvate Dioxygenase Inhibition By Structurally Diverse Small Molecules Adv Agrochem 2022.
ISSN: ESSN 2773-2371
DOI: 10.1016/J.AAC.2022.10.002