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Cobalt in PDB 7xcn: Crystal Structure of the Mttb-Mttc Complex at 2.7 A Resolution

Enzymatic activity of Crystal Structure of the Mttb-Mttc Complex at 2.7 A Resolution

All present enzymatic activity of Crystal Structure of the Mttb-Mttc Complex at 2.7 A Resolution:
2.1.1.250;

Protein crystallography data

The structure of Crystal Structure of the Mttb-Mttc Complex at 2.7 A Resolution, PDB code: 7xcn was solved by J.Li, M.K.Chan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 120.434, 188.138, 123.952, 90, 119.25, 90
R / Rfree (%) 19.2 / 23.8

Cobalt Binding Sites:

The binding sites of Cobalt atom in the Crystal Structure of the Mttb-Mttc Complex at 2.7 A Resolution (pdb code 7xcn). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 6 binding sites of Cobalt where determined in the Crystal Structure of the Mttb-Mttc Complex at 2.7 A Resolution, PDB code: 7xcn:
Jump to Cobalt binding site number: 1; 2; 3; 4; 5; 6;

Cobalt binding site 1 out of 6 in 7xcn

Go back to Cobalt Binding Sites List in 7xcn
Cobalt binding site 1 out of 6 in the Crystal Structure of the Mttb-Mttc Complex at 2.7 A Resolution


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Crystal Structure of the Mttb-Mttc Complex at 2.7 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Co301

b:47.8
occ:1.00
CO M:HCB301 0.0 47.8 1.0
N21 M:HCB301 1.9 48.9 1.0
N24 M:HCB301 1.9 46.0 1.0
N23 M:HCB301 1.9 53.6 1.0
N22 M:HCB301 1.9 51.1 1.0
NE2 M:HIS107 2.3 43.7 1.0
C19 M:HCB301 2.9 44.3 1.0
C9 M:HCB301 2.9 53.4 1.0
C1 M:HCB301 2.9 45.2 1.0
C11 M:HCB301 2.9 50.7 1.0
C4 M:HCB301 2.9 47.5 1.0
C16 M:HCB301 3.0 52.4 1.0
C14 M:HCB301 3.0 54.0 1.0
C6 M:HCB301 3.0 44.3 1.0
C10 M:HCB301 3.2 47.2 1.0
CE1 M:HIS107 3.3 49.1 1.0
CD2 M:HIS107 3.3 51.0 1.0
C5 M:HCB301 3.4 40.1 1.0
C15 M:HCB301 3.4 56.6 1.0
C20 M:HCB301 3.5 30.1 1.0
O3 A:GOL601 4.0 64.7 1.0
C18 M:HCB301 4.1 50.7 1.0
C2 M:HCB301 4.2 43.3 1.0
C8 M:HCB301 4.2 51.2 1.0
C17 M:HCB301 4.2 50.2 1.0
C3 M:HCB301 4.2 45.8 1.0
C12 M:HCB301 4.3 51.6 1.0
C13 M:HCB301 4.3 53.8 1.0
C7 M:HCB301 4.3 54.1 1.0
ND1 M:HIS107 4.4 47.7 1.0
CG M:HIS107 4.5 50.2 1.0
C26 M:HCB301 4.6 37.2 1.0
C1 A:GOL601 4.6 82.0 1.0
C54 M:HCB301 4.9 55.2 1.0
C35 M:HCB301 4.9 43.2 1.0
C53 M:HCB301 4.9 58.5 1.0
C37 M:HCB301 5.0 58.8 1.0

Cobalt binding site 2 out of 6 in 7xcn

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Cobalt binding site 2 out of 6 in the Crystal Structure of the Mttb-Mttc Complex at 2.7 A Resolution


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Crystal Structure of the Mttb-Mttc Complex at 2.7 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Co301

b:47.6
occ:1.00
CO N:HCB301 0.0 47.6 1.0
N24 N:HCB301 1.9 56.2 1.0
N21 N:HCB301 1.9 57.2 1.0
N23 N:HCB301 1.9 56.0 1.0
N22 N:HCB301 2.0 59.6 1.0
NE2 N:HIS107 2.4 59.4 1.0
C19 N:HCB301 2.8 57.8 1.0
C9 N:HCB301 2.9 54.9 1.0
C1 N:HCB301 2.9 57.8 1.0
C11 N:HCB301 2.9 51.7 1.0
C4 N:HCB301 3.0 60.8 1.0
C16 N:HCB301 3.0 58.9 1.0
C14 N:HCB301 3.0 54.0 1.0
C6 N:HCB301 3.1 60.2 1.0
C10 N:HCB301 3.2 54.6 1.0
CE1 N:HIS107 3.3 52.6 1.0
CD2 N:HIS107 3.3 61.8 1.0
C5 N:HCB301 3.4 61.1 1.0
C15 N:HCB301 3.4 58.3 1.0
C20 N:HCB301 3.6 49.3 1.0
O N:HOH413 4.0 31.3 1.0
C18 N:HCB301 4.1 52.0 1.0
C2 N:HCB301 4.2 61.2 1.0
C17 N:HCB301 4.2 52.9 1.0
C3 N:HCB301 4.2 58.8 1.0
C8 N:HCB301 4.2 54.4 1.0
C12 N:HCB301 4.3 52.8 1.0
C13 N:HCB301 4.3 48.7 1.0
C7 N:HCB301 4.4 58.1 1.0
ND1 N:HIS107 4.4 57.6 1.0
CG N:HIS107 4.5 62.8 1.0
C26 N:HCB301 4.6 57.1 1.0
C54 N:HCB301 4.9 52.5 1.0
C53 N:HCB301 4.9 62.2 1.0
C35 N:HCB301 5.0 64.7 1.0
C42 N:HCB301 5.0 51.5 1.0

Cobalt binding site 3 out of 6 in 7xcn

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Cobalt binding site 3 out of 6 in the Crystal Structure of the Mttb-Mttc Complex at 2.7 A Resolution


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Crystal Structure of the Mttb-Mttc Complex at 2.7 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Co301

b:39.0
occ:1.00
CO O:HCB301 0.0 39.0 1.0
N21 O:HCB301 1.9 43.6 1.0
N24 O:HCB301 1.9 46.8 1.0
N23 O:HCB301 1.9 46.0 1.0
N22 O:HCB301 1.9 48.1 1.0
NE2 O:HIS107 2.3 45.6 1.0
C19 O:HCB301 2.9 40.8 1.0
C9 O:HCB301 2.9 48.9 1.0
C1 O:HCB301 2.9 46.3 1.0
C11 O:HCB301 2.9 50.2 1.0
C4 O:HCB301 2.9 43.9 1.0
C16 O:HCB301 3.0 47.6 1.0
C14 O:HCB301 3.0 43.4 1.0
C6 O:HCB301 3.1 48.4 1.0
O1 C:GOL601 3.2 59.7 1.0
C10 O:HCB301 3.2 45.8 1.0
CE1 O:HIS107 3.3 45.1 1.0
CD2 O:HIS107 3.3 44.2 1.0
C5 O:HCB301 3.4 43.7 1.0
C15 O:HCB301 3.4 52.4 1.0
C20 O:HCB301 3.5 27.9 1.0
C18 O:HCB301 4.1 42.9 1.0
C2 O:HCB301 4.2 45.8 1.0
C8 O:HCB301 4.2 58.6 1.0
C17 O:HCB301 4.2 46.2 1.0
C3 O:HCB301 4.2 46.5 1.0
C12 O:HCB301 4.3 47.3 1.0
C13 O:HCB301 4.3 40.2 1.0
C7 O:HCB301 4.3 46.9 1.0
ND1 O:HIS107 4.4 47.9 1.0
CG O:HIS107 4.5 41.2 1.0
C1 C:GOL601 4.6 73.5 1.0
C26 O:HCB301 4.6 36.6 1.0
C3 C:GOL601 4.8 74.7 1.0
C54 O:HCB301 4.9 53.0 1.0
C35 O:HCB301 4.9 38.7 1.0
C53 O:HCB301 5.0 59.7 1.0
C37 O:HCB301 5.0 44.9 1.0

Cobalt binding site 4 out of 6 in 7xcn

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Cobalt binding site 4 out of 6 in the Crystal Structure of the Mttb-Mttc Complex at 2.7 A Resolution


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of Crystal Structure of the Mttb-Mttc Complex at 2.7 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Co301

b:41.4
occ:1.00
CO P:HCB301 0.0 41.4 1.0
N24 P:HCB301 1.9 49.5 1.0
N21 P:HCB301 1.9 42.9 1.0
N23 P:HCB301 1.9 44.8 1.0
N22 P:HCB301 1.9 47.0 1.0
NE2 P:HIS107 2.3 40.0 1.0
C9 P:HCB301 2.9 47.4 1.0
C19 P:HCB301 2.9 43.6 1.0
C11 P:HCB301 2.9 41.0 1.0
C1 P:HCB301 2.9 40.9 1.0
C4 P:HCB301 3.0 39.1 1.0
C16 P:HCB301 3.0 47.9 1.0
C14 P:HCB301 3.0 46.7 1.0
C6 P:HCB301 3.0 43.1 1.0
C10 P:HCB301 3.2 49.2 1.0
CE1 P:HIS107 3.3 52.7 1.0
CD2 P:HIS107 3.3 53.9 1.0
C5 P:HCB301 3.4 36.2 1.0
C15 P:HCB301 3.4 48.9 1.0
C20 P:HCB301 3.5 27.5 1.0
O P:HOH406 3.8 40.5 1.0
C18 P:HCB301 4.1 42.3 1.0
C8 P:HCB301 4.2 47.1 1.0
C2 P:HCB301 4.2 41.3 1.0
C17 P:HCB301 4.3 46.1 1.0
C3 P:HCB301 4.3 39.4 1.0
C12 P:HCB301 4.3 38.6 1.0
C13 P:HCB301 4.3 41.9 1.0
C7 P:HCB301 4.3 44.7 1.0
ND1 P:HIS107 4.4 51.9 1.0
CG P:HIS107 4.5 50.6 1.0
C26 P:HCB301 4.6 28.2 1.0
C35 P:HCB301 4.9 41.9 1.0
C54 P:HCB301 4.9 50.5 1.0
C53 P:HCB301 4.9 52.1 1.0
C37 P:HCB301 5.0 55.6 1.0
C42 P:HCB301 5.0 52.5 1.0

Cobalt binding site 5 out of 6 in 7xcn

Go back to Cobalt Binding Sites List in 7xcn
Cobalt binding site 5 out of 6 in the Crystal Structure of the Mttb-Mttc Complex at 2.7 A Resolution


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 5 of Crystal Structure of the Mttb-Mttc Complex at 2.7 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Co301

b:68.4
occ:1.00
CO Q:HCB301 0.0 68.4 1.0
N24 Q:HCB301 1.9 74.6 1.0
N21 Q:HCB301 1.9 68.1 1.0
N23 Q:HCB301 1.9 68.0 1.0
N22 Q:HCB301 2.0 66.0 1.0
NE2 Q:HIS107 2.3 80.6 1.0
C19 Q:HCB301 2.9 72.2 1.0
C9 Q:HCB301 2.9 65.9 1.0
C11 Q:HCB301 2.9 62.4 1.0
C1 Q:HCB301 2.9 66.8 1.0
C4 Q:HCB301 3.0 61.4 1.0
C16 Q:HCB301 3.0 78.3 1.0
C14 Q:HCB301 3.0 67.3 1.0
C6 Q:HCB301 3.1 63.2 1.0
C10 Q:HCB301 3.2 67.1 1.0
CE1 Q:HIS107 3.3 79.2 1.0
O2 E:GOL601 3.3 59.9 1.0
CD2 Q:HIS107 3.3 87.5 1.0
C5 Q:HCB301 3.4 65.3 1.0
C15 Q:HCB301 3.4 76.3 1.0
C20 Q:HCB301 3.6 53.7 1.0
C18 Q:HCB301 4.2 73.4 1.0
C2 Q:HCB301 4.2 66.2 1.0
C3 Q:HCB301 4.3 60.1 1.0
C17 Q:HCB301 4.3 75.5 1.0
C8 Q:HCB301 4.3 62.8 1.0
C12 Q:HCB301 4.3 59.6 1.0
C13 Q:HCB301 4.3 63.4 1.0
C7 Q:HCB301 4.4 58.7 1.0
C2 E:GOL601 4.4 70.4 1.0
ND1 Q:HIS107 4.4 86.1 1.0
CG Q:HIS107 4.5 90.9 1.0
C26 Q:HCB301 4.6 68.6 1.0
C1 E:GOL601 4.7 74.4 1.0
C54 Q:HCB301 4.9 75.4 1.0
C53 Q:HCB301 5.0 74.2 1.0
C35 Q:HCB301 5.0 61.1 1.0
C37 Q:HCB301 5.0 54.4 1.0

Cobalt binding site 6 out of 6 in 7xcn

Go back to Cobalt Binding Sites List in 7xcn
Cobalt binding site 6 out of 6 in the Crystal Structure of the Mttb-Mttc Complex at 2.7 A Resolution


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 6 of Crystal Structure of the Mttb-Mttc Complex at 2.7 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Co301

b:47.9
occ:1.00
CO R:HCB301 0.0 47.9 1.0
N24 R:HCB301 1.9 48.7 1.0
N21 R:HCB301 1.9 51.2 1.0
N23 R:HCB301 1.9 51.1 1.0
N22 R:HCB301 1.9 52.6 1.0
NE2 R:HIS107 2.3 51.5 1.0
C19 R:HCB301 2.9 42.0 1.0
C9 R:HCB301 2.9 54.0 1.0
C11 R:HCB301 2.9 50.7 1.0
C1 R:HCB301 2.9 46.4 1.0
C4 R:HCB301 3.0 46.0 1.0
C16 R:HCB301 3.0 51.3 1.0
C14 R:HCB301 3.0 48.8 1.0
C6 R:HCB301 3.1 49.9 1.0
O3 F:GOL601 3.1 59.5 1.0
C10 R:HCB301 3.2 48.8 1.0
CE1 R:HIS107 3.3 52.5 1.0
CD2 R:HIS107 3.3 49.3 1.0
C5 R:HCB301 3.4 47.5 1.0
C15 R:HCB301 3.4 56.4 1.0
C20 R:HCB301 3.5 30.1 1.0
C18 R:HCB301 4.1 47.5 1.0
C2 R:HCB301 4.2 45.4 1.0
C8 R:HCB301 4.2 59.7 1.0
C17 R:HCB301 4.2 54.8 1.0
C3 R:HCB301 4.3 42.8 1.0
C12 R:HCB301 4.3 47.8 1.0
C13 R:HCB301 4.3 41.7 1.0
C7 R:HCB301 4.3 53.1 1.0
ND1 R:HIS107 4.4 51.5 1.0
C3 F:GOL601 4.4 66.6 1.0
CG R:HIS107 4.5 52.4 1.0
C26 R:HCB301 4.6 35.5 1.0
C54 R:HCB301 4.9 55.5 1.0
C35 R:HCB301 4.9 40.1 1.0
C53 R:HCB301 4.9 60.7 1.0
C37 R:HCB301 5.0 50.4 1.0
C42 R:HCB301 5.0 60.9 1.0

Reference:

J.Li, P.T.Kang, R.Jiang, J.Y.Lee, J.A.Soares, J.A.Krzycki, M.K.Chan. Insights Into Pyrrolysine Function From Structures of A Trimethylamine Methyltransferase and Its Corrinoid Protein Complex Commun Biol 2023.
ISSN: ESSN 2399-3642
DOI: 10.1038/S42003-022-04397-3
Page generated: Tue Apr 4 23:05:28 2023

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