Cobalt in PDB 7yvx: Left-Handed Dna Duplex Containing Consecutive G-G Base Pairs

The structure of Left-Handed Dna Duplex Containing Consecutive G-G Base Pairs, PDB code: 7yvx was solved by J.Kondo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.56 / 2.99
Space group	P 64 2 2
Cell size a, b, c (Å), α, β, γ (°)	43.375, 43.375, 71.998, 90, 90, 120
R / Rfree (%)	19.5 / 25.5

The structure of Left-Handed Dna Duplex Containing Consecutive G-G Base Pairs also contains other interesting chemical elements:

Bromine

(Br)

1 atom

The binding sites of Cobalt atom in the Left-Handed Dna Duplex Containing Consecutive G-G Base Pairs (pdb code 7yvx). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 3 binding sites of Cobalt where determined in the Left-Handed Dna Duplex Containing Consecutive G-G Base Pairs, PDB code: 7yvx:
Jump to Cobalt binding site number: 1; 2; 3;

Cobalt binding site 1 out of 3 in the Left-Handed Dna Duplex Containing Consecutive G-G Base Pairs


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of Left-Handed Dna Duplex Containing Consecutive G-G Base Pairs within 5.0Å range: probe atom residue distance (Å) B Occ A:Co101 b:87.3 occ:0.50 O6 A:DG6 3.9 55.6 1.0 N7 A:DG5 4.2 52.2 1.0 C6 A:DG6 4.8 48.0 1.0 C8 A:DG5 5.0 48.2 1.0

Cobalt binding site 2 out of 3 in the Left-Handed Dna Duplex Containing Consecutive G-G Base Pairs


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of Left-Handed Dna Duplex Containing Consecutive G-G Base Pairs within 5.0Å range: probe atom residue distance (Å) B Occ A:Co102 b:84.1 occ:0.47 N7 A:DG10 3.6 38.9 1.0 O6 A:DG10 3.9 39.5 1.0 C5 A:DG10 4.4 35.2 1.0 C6 A:DG10 4.5 38.8 1.0 C8 A:DG10 4.6 47.0 1.0

Cobalt binding site 3 out of 3 in the Left-Handed Dna Duplex Containing Consecutive G-G Base Pairs


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of Left-Handed Dna Duplex Containing Consecutive G-G Base Pairs within 5.0Å range: probe atom residue distance (Å) B Occ A:Co103 b:120.2 occ:1.00 OP1 A:DG6 4.0 75.9 1.0 OP2 A:DC7 4.0 62.5 1.0 P A:DG6 4.9 71.3 1.0

J.Kondo, J.Kondo. N/A N/A.