Cobalt in PDB 8bai: The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.

The structure of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin., PDB code: 8bai was solved by J.Whittaker, J.M.Martinez Felices, A.Guskov, D.J.Slotboom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.63 / 1.69
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	49.24, 79.936, 101.047, 89.97, 89.89, 82.28
R / Rfree (%)	15.7 / 18

The structure of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. also contains other interesting chemical elements:

Sodium

(Na)

2 atoms

The binding sites of Cobalt atom in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. (pdb code 8bai). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 4 binding sites of Cobalt where determined in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin., PDB code: 8bai:
Jump to Cobalt binding site number: 1; 2; 3; 4;

Cobalt binding site 1 out of 4 in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. within 5.0Å range: probe atom residue distance (Å) B Occ A:Co408 b:12.2 occ:1.00 CO A:CNC408 0.0 12.2 1.0 C1A A:CNC408 1.8 17.4 1.0 N21 A:CNC408 1.8 11.2 1.0 N23 A:CNC408 1.8 13.2 1.0 N24 A:CNC408 1.8 12.1 1.0 N22 A:CNC408 1.9 11.6 1.0 N3B A:CNC408 2.3 12.2 1.0 C19 A:CNC408 2.7 11.0 1.0 C9 A:CNC408 2.8 12.4 1.0 C4 A:CNC408 2.8 11.0 1.0 C14 A:CNC408 2.8 12.3 1.0 C1 A:CNC408 2.8 10.3 1.0 C11 A:CNC408 2.8 12.3 1.0 C6 A:CNC408 2.9 11.6 1.0 C16 A:CNC408 2.9 11.1 1.0 N1A A:CNC408 2.9 19.2 1.0 C2B A:CNC408 3.2 12.9 1.0 C10 A:CNC408 3.2 11.4 1.0 C5 A:CNC408 3.2 11.5 1.0 C15 A:CNC408 3.2 11.2 1.0 C9B A:CNC408 3.3 11.5 1.0 C20 A:CNC408 3.6 9.0 1.0 C4B A:CNC408 3.8 11.6 1.0 C2 A:CNC408 4.0 10.5 1.0 C18 A:CNC408 4.1 10.1 1.0 C3 A:CNC408 4.1 10.3 1.0 C8 A:CNC408 4.1 12.3 1.0 C13 A:CNC408 4.1 13.6 1.0 C12 A:CNC408 4.1 13.6 1.0 C7 A:CNC408 4.2 12.4 1.0 C17 A:CNC408 4.2 9.8 1.0 N1B A:CNC408 4.3 12.9 1.0 C8B A:CNC408 4.5 12.6 1.0 C26 A:CNC408 4.5 11.0 1.0 C35 A:CNC408 4.7 12.0 1.0 C37 A:CNC408 4.7 12.2 1.0 C53 A:CNC408 4.7 12.3 1.0 C41 A:CNC408 4.8 14.3 1.0 C47 A:CNC408 4.8 15.3 1.0 C48 A:CNC408 4.9 17.5 1.0 C54 A:CNC408 4.9 11.8 1.0

Cobalt binding site 2 out of 4 in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. within 5.0Å range: probe atom residue distance (Å) B Occ B:Co408 b:11.6 occ:1.00 CO B:CNC408 0.0 11.6 1.0 C1A B:CNC408 1.8 16.9 1.0 N21 B:CNC408 1.8 9.8 1.0 N24 B:CNC408 1.8 12.2 1.0 N22 B:CNC408 1.9 10.8 1.0 N23 B:CNC408 1.9 13.0 1.0 N3B B:CNC408 2.3 11.9 1.0 C19 B:CNC408 2.8 10.9 1.0 C9 B:CNC408 2.8 11.5 1.0 C1 B:CNC408 2.9 9.8 1.0 C4 B:CNC408 2.9 9.3 1.0 C11 B:CNC408 2.9 12.5 1.0 C14 B:CNC408 2.9 12.6 1.0 C16 B:CNC408 2.9 10.1 1.0 N1A B:CNC408 2.9 19.2 1.0 C6 B:CNC408 3.0 10.2 1.0 C2B B:CNC408 3.2 12.6 1.0 C10 B:CNC408 3.3 12.0 1.0 C9B B:CNC408 3.3 10.9 1.0 C15 B:CNC408 3.3 11.5 1.0 C5 B:CNC408 3.3 10.2 1.0 C20 B:CNC408 3.5 8.5 1.0 C4B B:CNC408 3.8 10.6 1.0 C18 B:CNC408 4.1 9.4 1.0 C2 B:CNC408 4.1 8.9 1.0 C3 B:CNC408 4.2 9.5 1.0 C8 B:CNC408 4.2 11.6 1.0 C17 B:CNC408 4.2 9.1 1.0 C12 B:CNC408 4.2 14.3 1.0 C7 B:CNC408 4.2 11.9 1.0 C13 B:CNC408 4.3 13.5 1.0 N1B B:CNC408 4.3 11.7 1.0 C8B B:CNC408 4.4 12.3 1.0 C26 B:CNC408 4.6 9.2 1.0 C37 B:CNC408 4.7 10.7 1.0 C47 B:CNC408 4.8 14.6 1.0 C41 B:CNC408 4.9 11.9 1.0 C53 B:CNC408 4.9 12.7 1.0 C35 B:CNC408 4.9 9.2 1.0 C48 B:CNC408 4.9 18.3 1.0 C54 B:CNC408 5.0 9.7 1.0

Cobalt binding site 3 out of 4 in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 3 of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. within 5.0Å range: probe atom residue distance (Å) B Occ C:Co406 b:12.0 occ:1.00 CO C:CNC406 0.0 12.0 1.0 C1A C:CNC406 1.8 17.1 1.0 N21 C:CNC406 1.8 9.4 1.0 N22 C:CNC406 1.9 11.3 1.0 N24 C:CNC406 1.9 12.4 1.0 N23 C:CNC406 1.9 13.9 1.0 N3B C:CNC406 2.3 12.6 1.0 C19 C:CNC406 2.8 10.7 1.0 C9 C:CNC406 2.8 12.2 1.0 C4 C:CNC406 2.8 9.4 1.0 C11 C:CNC406 2.9 13.4 1.0 C1 C:CNC406 2.9 9.6 1.0 C14 C:CNC406 2.9 13.7 1.0 C6 C:CNC406 2.9 10.9 1.0 C16 C:CNC406 3.0 10.5 1.0 N1A C:CNC406 3.0 19.5 1.0 C2B C:CNC406 3.1 12.4 1.0 C10 C:CNC406 3.2 14.6 1.0 C9B C:CNC406 3.3 11.8 1.0 C5 C:CNC406 3.3 10.1 1.0 C15 C:CNC406 3.3 12.0 1.0 C20 C:CNC406 3.5 8.8 1.0 C4B C:CNC406 3.8 11.0 1.0 C18 C:CNC406 4.1 10.3 1.0 C2 C:CNC406 4.1 9.0 1.0 C3 C:CNC406 4.2 9.2 1.0 C12 C:CNC406 4.2 15.0 1.0 C8 C:CNC406 4.2 12.0 1.0 C13 C:CNC406 4.2 14.1 1.0 C7 C:CNC406 4.2 11.9 1.0 C17 C:CNC406 4.2 10.4 1.0 N1B C:CNC406 4.3 11.5 1.0 C8B C:CNC406 4.4 12.2 1.0 C26 C:CNC406 4.6 9.7 1.0 C37 C:CNC406 4.8 11.8 1.0 C41 C:CNC406 4.8 13.3 1.0 C35 C:CNC406 4.8 11.1 1.0 C47 C:CNC406 4.9 16.1 1.0 C53 C:CNC406 4.9 14.0 1.0 C48 C:CNC406 4.9 18.8 1.0 C54 C:CNC406 5.0 10.6 1.0

Cobalt binding site 4 out of 4 in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 4 of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. within 5.0Å range: probe atom residue distance (Å) B Occ D:Co406 b:13.1 occ:1.00 CO D:CNC406 0.0 13.1 1.0 C1A D:CNC406 1.8 19.2 1.0 N21 D:CNC406 1.9 11.0 1.0 N24 D:CNC406 1.9 13.2 1.0 N23 D:CNC406 1.9 14.2 1.0 N22 D:CNC406 1.9 12.8 1.0 N3B D:CNC406 2.3 14.2 1.0 C19 D:CNC406 2.8 10.8 1.0 C1 D:CNC406 2.9 10.8 1.0 C4 D:CNC406 2.9 11.3 1.0 C11 D:CNC406 2.9 13.7 1.0 C9 D:CNC406 2.9 12.4 1.0 C14 D:CNC406 2.9 13.7 1.0 C6 D:CNC406 2.9 11.6 1.0 C16 D:CNC406 3.0 11.4 1.0 N1A D:CNC406 3.0 21.2 1.0 C2B D:CNC406 3.2 14.2 1.0 C10 D:CNC406 3.2 12.9 1.0 C9B D:CNC406 3.3 12.8 1.0 C5 D:CNC406 3.3 10.7 1.0 C15 D:CNC406 3.3 12.8 1.0 C20 D:CNC406 3.5 9.4 1.0 C4B D:CNC406 3.8 13.1 1.0 C18 D:CNC406 4.1 10.6 1.0 C2 D:CNC406 4.1 10.8 1.0 C3 D:CNC406 4.2 10.7 1.0 C12 D:CNC406 4.2 15.4 1.0 C8 D:CNC406 4.2 12.4 1.0 C13 D:CNC406 4.2 15.4 1.0 C17 D:CNC406 4.2 11.6 1.0 C7 D:CNC406 4.2 11.9 1.0 N1B D:CNC406 4.4 14.9 1.0 C8B D:CNC406 4.5 14.2 1.0 C26 D:CNC406 4.6 12.2 1.0 C37 D:CNC406 4.7 13.1 1.0 C41 D:CNC406 4.8 14.2 1.0 C35 D:CNC406 4.8 10.6 1.0 C47 D:CNC406 4.8 17.4 1.0 C53 D:CNC406 4.9 13.0 1.0 C48 D:CNC406 4.9 19.3 1.0 C54 D:CNC406 5.0 11.8 1.0

J.Whittaker, A.Guskov. The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. To Be Published.