Cobalt in PDB 8baz: The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.

The structure of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin., PDB code: 8baz was solved by J.Whittaker, J.M.Martinez-Felices, A.Guskov, D.J.Slotboom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.20 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	49.177, 100.593, 79.579, 90, 97.6, 90
R / Rfree (%)	18.1 / 24.3

The structure of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. also contains other interesting chemical elements:

Sodium

(Na)

6 atoms

The binding sites of Cobalt atom in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. (pdb code 8baz). This binding sites where shown within 5.0 Angstroms radius around Cobalt atom.
In total 2 binding sites of Cobalt where determined in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin., PDB code: 8baz:
Jump to Cobalt binding site number: 1; 2;

Cobalt binding site 1 out of 2 in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 1 of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. within 5.0Å range: probe atom residue distance (Å) B Occ A:Co401 b:24.8 occ:1.00 CO A:CBY401 0.0 24.8 1.0 N21 A:CBY401 1.9 23.1 1.0 N22 A:CBY401 1.9 23.2 1.0 N24 A:CBY401 1.9 24.1 1.0 N23 A:CBY401 1.9 24.6 1.0 C A:CYN419 2.0 20.8 1.0 O A:HOH564 2.7 26.2 1.0 C19 A:CBY401 2.8 23.4 1.0 C9 A:CBY401 2.8 22.7 1.0 C4 A:CBY401 2.9 21.0 1.0 H19 A:CBY401 2.9 23.7 1.0 C1 A:CBY401 2.9 23.8 1.0 C11 A:CBY401 2.9 27.2 1.0 C14 A:CBY401 2.9 24.8 1.0 C16 A:CBY401 3.0 22.9 1.0 C6 A:CBY401 3.0 22.3 1.0 N A:CYN419 3.1 24.2 1.0 C10 A:CBY401 3.2 24.7 1.0 C5 A:CBY401 3.3 22.4 1.0 C15 A:CBY401 3.4 25.2 1.0 H20 A:CBY401 3.5 22.8 1.0 C20 A:CBY401 3.6 22.3 1.0 H20B A:CBY401 3.7 22.7 1.0 H26A A:CBY401 4.0 26.7 1.0 C18 A:CBY401 4.1 24.3 1.0 C2 A:CBY401 4.1 23.9 1.0 H42A A:CBY401 4.1 30.9 1.0 H49 A:CBY401 4.1 42.7 1.0 C3 A:CBY401 4.1 23.9 1.0 C8 A:CBY401 4.1 24.1 1.0 C12 A:CBY401 4.2 36.0 1.0 H311 A:CBY401 4.2 24.9 1.0 C13 A:CBY401 4.2 30.3 1.0 C17 A:CBY401 4.2 24.0 1.0 C7 A:CBY401 4.2 21.3 1.0 H46 A:CBY401 4.2 42.9 1.0 H37 A:CBY401 4.2 21.2 1.0 H18 A:CBY401 4.2 24.1 1.0 H49A A:CBY401 4.4 42.7 1.0 C26 A:CBY401 4.4 27.1 1.0 H20A A:CBY401 4.5 22.5 1.0 HZ2 A:TRP227 4.6 42.6 1.0 H26 A:CBY401 4.6 27.2 1.0 H56 A:CBY401 4.6 27.4 1.0 C49 A:CBY401 4.6 43.6 1.0 H3 A:CBY401 4.7 24.0 1.0 C46 A:CBY401 4.8 45.4 1.0 C37 A:CBY401 4.8 21.0 1.0 H8 A:CBY401 4.8 24.3 1.0 C35 A:CBY401 4.8 22.0 1.0 C42 A:CBY401 4.8 31.1 1.0 C53 A:CBY401 4.8 30.4 1.0 H42 A:CBY401 4.8 31.4 1.0 H54A A:CBY401 4.9 22.5 1.0 H13 A:CBY401 4.9 30.9 1.0 HH2 A:TRP149 4.9 24.1 1.0 H30A A:CBY401 4.9 25.6 1.0 HH2 A:TRP227 5.0 41.3 1.0 H54 A:CBY401 5.0 22.2 1.0 C54 A:CBY401 5.0 21.9 1.0

Cobalt binding site 2 out of 2 in the The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.


Mono view


Stereo pair view

A full contact list of Cobalt with other atoms in the Co binding site number 2 of The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin. within 5.0Å range: probe atom residue distance (Å) B Occ B:Co403 b:25.6 occ:1.00 CO B:CBY403 0.0 25.6 1.0 N21 B:CBY403 1.9 25.6 1.0 N24 B:CBY403 1.9 22.9 1.0 N22 B:CBY403 1.9 24.1 1.0 N23 B:CBY403 1.9 25.0 1.0 C B:CYN417 2.0 21.2 1.0 C19 B:CBY403 2.7 22.4 1.0 O B:HOH506 2.8 31.9 1.0 C1 B:CBY403 2.8 24.7 1.0 C9 B:CBY403 2.8 25.5 1.0 C4 B:CBY403 2.8 24.1 1.0 H19 B:CBY403 2.9 22.8 1.0 C11 B:CBY403 2.9 28.3 1.0 C14 B:CBY403 2.9 26.0 1.0 C16 B:CBY403 2.9 23.3 1.0 C6 B:CBY403 3.0 23.9 1.0 N B:CYN417 3.1 23.4 1.0 C10 B:CBY403 3.2 25.6 1.0 C5 B:CBY403 3.3 24.1 1.0 C15 B:CBY403 3.4 25.3 1.0 H20 B:CBY403 3.4 25.7 1.0 C20 B:CBY403 3.5 25.8 1.0 H20B B:CBY403 3.7 25.5 1.0 H26A B:CBY403 3.9 26.6 1.0 HN45 B:CBY403 4.0 53.2 1.0 C18 B:CBY403 4.0 23.0 1.0 C2 B:CBY403 4.0 25.6 1.0 C13 B:CBY403 4.1 33.2 1.0 C3 B:CBY403 4.1 25.2 1.0 H48A B:CBY403 4.1 39.7 1.0 C8 B:CBY403 4.2 25.8 1.0 O51 B:CBY403 4.2 74.2 1.0 C12 B:CBY403 4.2 36.5 1.0 C17 B:CBY403 4.2 23.3 1.0 H311 B:CBY403 4.2 26.2 1.0 H18 B:CBY403 4.2 23.1 1.0 H42 B:CBY403 4.2 34.3 1.0 C7 B:CBY403 4.2 24.3 1.0 H37 B:CBY403 4.3 24.9 1.0 C26 B:CBY403 4.4 26.4 1.0 H20A B:CBY403 4.5 25.4 1.0 HZ2 B:TRP227 4.5 44.4 1.0 C48 B:CBY403 4.6 39.1 1.0 H26 B:CBY403 4.7 26.5 1.0 H3 B:CBY403 4.7 25.1 1.0 H56 B:CBY403 4.8 28.6 1.0 H8 B:CBY403 4.8 26.3 1.0 C35 B:CBY403 4.8 24.9 1.0 C37 B:CBY403 4.8 24.9 1.0 H54A B:CBY403 4.8 22.9 1.0 C53 B:CBY403 4.8 28.3 1.0 N45 B:CBY403 4.9 57.5 1.0 HH2 B:TRP149 4.9 26.4 1.0 H54 B:CBY403 4.9 22.6 1.0 H13 B:CBY403 4.9 33.5 1.0 C54 B:CBY403 4.9 22.6 1.0 HH2 B:TRP227 4.9 43.0 1.0 H46 B:CBY403 4.9 41.9 1.0 C46 B:CBY403 5.0 44.5 1.0

J.Whittaker, A.Guskov. The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobinamide. To Be Published.